CK939209

Overview
NameCK939209
Unique NameCK939209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.289e-23
Identity = 51/86 (59.30%), Postives = 68/86 (79.07%), Query Frame = 3
Query:  210 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            +++ +D LFKLL+IGDSGVGK+ +L  F+ D F      TIG+DFK+K V++ GKK+KL IWDTAGQERF T+T+SYYRGA GI++
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.289e-23
Identity = 51/86 (59.30%), Postives = 68/86 (79.07%), Query Frame = 3
Query:  210 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            +++ +D LFKLL+IGDSGVGK+ +L  F+ D F      TIG+DFK+K V++ GKK+KL IWDTAGQERF T+T+SYYRGA GI++
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.289e-23
Identity = 51/86 (59.30%), Postives = 68/86 (79.07%), Query Frame = 3
Query:  210 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            +++ +D LFKLL+IGDSGVGK+ +L  F+ D F      TIG+DFK+K V++ GKK+KL IWDTAGQERF T+T+SYYRGA GI++
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.289e-23
Identity = 51/86 (59.30%), Postives = 68/86 (79.07%), Query Frame = 3
Query:  210 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            +++ +D LFKLL+IGDSGVGK+ +L  F+ D F      TIG+DFK+K V++ GKK+KL IWDTAGQERF T+T+SYYRGA GI++
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.289e-23
Identity = 51/86 (59.30%), Postives = 68/86 (79.07%), Query Frame = 3
Query:  210 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            +++ +D LFKLL+IGDSGVGK+ +L  F+ D F      TIG+DFK+K V++ GKK+KL IWDTAGQERF T+T+SYYRGA GI++
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.073e-22
Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 3
Query:  204 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            S S  E+D L K+L+IGDSGVGKS +LL F  + F +    TIGVDF ++ +++ GKK+KL IWDTAGQERF+T+T+SYYRGA G+I+
Sbjct:   24 SESHPEYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLII 111          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.401e-22
Identity = 49/82 (59.76%), Postives = 67/82 (81.71%), Query Frame = 3
Query:  222 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            +D+L KLL+IGDSGVGKS LLL F+  +F      TIG+DFK++ +++ GK++KL IWDTAGQERFRT+T++YYRGA GI++
Sbjct:   12 YDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.390e-22
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  222 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            +D LFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWDTAGQERF T+TSSYYRGA G ++
Sbjct:    5 YDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLV 86          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.121e-22
Identity = 50/86 (58.14%), Postives = 67/86 (77.91%), Query Frame = 3
Query:  210 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            +++ +D LFKLL+IGDSGVGK+ +L  F+ D F      TIG+D K+K V++ GKK+KL IWDTAGQERF T+T+SYYRGA GI++
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87          

HSP 2 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  640 LIQIYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREXGCPFIECSAKTRVNVQQCF 882
            ++ +YD+T   +F N+S  W + ID ++ N+D  ++L+GNK D E +RVV K +G   ARE G  F E SAK  +N+++ F
Sbjct:   85 IMLVYDITNAKSFENISK-WLRNIDEHA-NEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAF 163          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.324e-22
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 3
Query:  198 SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            +S  SQ+E+DYL+K+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + +   GK +K  +WDTAGQER+R +TS+YYRGA G ++
Sbjct:    2 TSKGSQEEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALL 91          
The following BLAST results are available for this feature:
BLAST of CK939209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 358
Match NameE-valueIdentityDescription
RAB10_PONAB6.289e-2359.30Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE6.289e-2359.30Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN6.289e-2359.30Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_DISOM6.289e-2359.30Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB10_CANFA6.289e-2359.30Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB1C_DICDI1.073e-2257.95Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB8B_DICDI1.401e-2259.76Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB1C_HUMAN2.390e-2263.41Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB10_CHICK3.121e-2258.14Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RB11A_DICDI5.324e-2253.33Ras-related protein Rab-11A OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004432_H08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939209 ID=CK939209; Name=CK939209; organism=Citrus sinensis; type=EST; length=882bp
GGGACTGCGACGACAACGATCGCGATCTCCATTTTCACCTTTTTCTGTGA
CCACAGTGAACAGATCCTACTTTTGCCTATCGTCTTTGTAATTCATTCAT
CAAATTTCAGTGCTGTTGAGGTGGTGGTGATTTTGGGGTTTGTGGGATTT
GGATTTTGGTGGCAGTTTTTGAGAAAGAGAGTCAAATTTAGATGGATTCA
TCATCAGCAAGTCAGCAAGAATTTGATTACTTGTTCAAGTTGTTGATGAT
TGGAGATTCTGGTGTTGGTAAAAGTAGTCTCCTATTGAGCTTCACTTCTG
ACAACTTTGAAGAGCTTTCGCCCACTATTGGTGTCGATTTTAAGGTGAAA
TATGTTGACGTTGGGGGGAAGAAATTGAAACTTGCAATTTGGGATACAGC
TGGTCAGGAGAGATTTCGGACATTGACTAGTTCATACTACAGGGGTGCAC
AAGGCATCATTATGGGTATTTAATTTCATCTTTTTAGTGTAGTTACTTTG
TTTATTTTTCAAGGAAAATTTCTGGCTAATGCCTCATTGAAGAACATTGT
TTAATGTTGAATTAACCTTTTCCAATGTATAGAGCATCTTGACTCTGTCT
GGGCTTTGTAGTAGCGATTTCATATTTTTCAGAGATTGGCTTATCCAAAT
TTATGATGTTACAAGGCGAGACACATTTACTAATCTTTCTGATGTATGGG
CTAAGGAAATTGACTTATACTCAACAAACCAAGATTGTATCAAATTGCTC
GTTGGAAACAAAGTTGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGA
GGGCATAAACTTTGCGAGGGAATANGGATGCCCTTTTATTGAATGCAGTG
CTAAAACTCGTGTCAACGTACAGCAGTGCTTT
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