CX046984 | Citrus Genome Database

Overview


Name	CX046984
Unique Name	CX046984
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	440

Libraries


Library Name	Type
Ruby Orange Developing Seed cDNA Library UCRCS09	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX046984 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.411e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   42 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 269
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 105.916 bits (263), Expect = 7.352e-23
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 3

Query:  270 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDXRTLA 440
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 57

BLAST of CX046984 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 6.411e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   42 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 269
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 105.916 bits (263), Expect = 7.352e-23
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 3

Query:  270 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDXRTLA 440
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 57

BLAST of CX046984 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.411e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   42 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 269
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 105.916 bits (263), Expect = 7.352e-23
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 3

Query:  270 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDXRTLA 440
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 57

BLAST of CX046984 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.411e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   42 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 269
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 105.916 bits (263), Expect = 7.352e-23
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 3

Query:  270 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDXRTLA 440
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 57

BLAST of CX046984 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 6.411e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   42 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 269
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 105.916 bits (263), Expect = 7.352e-23
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 3

Query:  270 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDXRTLA 440
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 57

BLAST of CX046984 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.411e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   42 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 269
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 105.916 bits (263), Expect = 7.352e-23
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 3

Query:  270 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDXRTLA 440
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 57

BLAST of CX046984 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.411e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   42 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 269
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 105.916 bits (263), Expect = 7.352e-23
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 3

Query:  270 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDXRTLA 440
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 57

BLAST of CX046984 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.411e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   42 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 269
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 105.916 bits (263), Expect = 7.352e-23
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 3

Query:  270 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDXRTLA 440
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 57

BLAST of CX046984 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.411e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   42 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 269
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 105.916 bits (263), Expect = 7.352e-23
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 3

Query:  270 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDXRTLA 440
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 57

BLAST of CX046984 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.411e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   42 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 269
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 105.916 bits (263), Expect = 7.352e-23
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 3

Query:  270 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDXRTLA 440
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 57

The following BLAST results are available for this feature:

BLAST of CX046984 vs. ExPASy Swiss-Prot

BLAST of CX046984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94


Match Name	E-value	Identity	Description
UBIQ_RABIT	6.411e-35	96.05	Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1	[more]
UBIQ_PONPY	6.411e-35	96.05	Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2	[more]
UBIQ_PLUXY	6.411e-35	96.05	Ubiquitin OS=Plutella xylostella PE=3 SV=1	[more]
UBIQ_PIG	6.411e-35	96.05	Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1	[more]
UBIQ_PANTR	6.411e-35	96.05	Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2	[more]
UBIQ_OPHHA	6.411e-35	96.05	Ubiquitin OS=Ophiophagus hannah PE=3 SV=1	[more]
UBIQ_MOUSE	6.411e-35	96.05	Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1	[more]
UBIQ_MANSE	6.411e-35	96.05	Ubiquitin OS=Manduca sexta PE=3 SV=1	[more]
UBIQ_MACFA	6.411e-35	96.05	Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=...	[more]
UBIQ_ICTPU	6.411e-35	96.05	Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS09_11D09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11D09-H18-1-5.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX046984 ID=CX046984; Name=CX046984; organism=Citrus sinensis; type=EST; length=440bp
TTTAATTCGATAAAAGGCCTCCTTCTGTTCTCTCTGTCAAGATGCAAATC
TTTGTGAAAACTCTCACCGGCAAGACAATAACCCTTGAGGTTGAAAGCTC
CGACACCATTGATAATGTAAAAGCCAAGATCCAGGACAAGGAAGGGATCC
CACCAGATCAGCAGAGGCTTATCTTTGCTGGTAAACAGCTCGAGGATGGT
CGCACACTTGCTGACTATAATATCCAGAAGGAATCAACCCTCCACTTGGT
CCTTCGACTTAGGGGTGGTATGCAGATCTTTGTAAAGACCCTCACTGGCA
AGACGATTACTCTTGAGGTGGAAAGCTCCGACACCATTGACAATGTGAAA
GCCAAGATTCAAGACAAGGAAGGTATCCCACCAGACCAACAGAGACTTAT
CTTTGCCGGTAAACAGCTCGAGGATGNTCGCACACTTGCT