CK939182

Overview
NameCK939182
Unique NameCK939182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI_RICPR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia prowazekii GN=petA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.776e-44
Identity = 79/135 (58.52%), Postives = 102/135 (75.56%), Query Frame = 1
Query:  217 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKL 615
            S + S DVLAL+S+EVDLS+I  G TVTVKW+GKP+FI  RT ++I  A +V ++ L DP+ D VRVK  +  WLV +G+CTHLGC+PL + G++ GWFCPCHGS YD SGR+RKGPAP NL VP Y F+ + K+
Sbjct:   40 SFNPSADVLALSSIEVDLSNIAIGQTVTVKWQGKPIFITNRTHDEIAAARAVKMSELIDPERDEVRVKAGHDNWLVTIGICTHLGCVPLSHKGEYNGWFCPCHGSQYDSSGRVRKGPAPLNLAVPPYIFISDKKI 174          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI_RICTY (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia typhi GN=petA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.732e-43
Identity = 80/135 (59.26%), Postives = 102/135 (75.56%), Query Frame = 1
Query:  217 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKL 615
            S++ S DVLAL+S+EVDLSSI  G TVTVKW+GKP+FI  RT + I  A +V ++ L DP++D VRVK  +  WLV +G+CTHLGC+PL N G++ GWFCPCHGS YD SGR+RKGPA  NL VP Y F+ + K+
Sbjct:   40 SLNPSTDVLALSSIEVDLSSIAIGQTVTVKWQGKPIFITNRTPDGIASARAVKMSELIDPEKDEVRVKAGHDNWLVTIGICTHLGCVPLSNQGEYNGWFCPCHGSQYDSSGRVRKGPASLNLVVPPYIFISDTKI 174          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI_RICFE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia felis GN=petA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.732e-43
Identity = 79/135 (58.52%), Postives = 101/135 (74.81%), Query Frame = 1
Query:  217 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKL 615
            S++ S DVLAL+S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V ++ L DP+ D  RVK  +  WLV +G+CTHLGC+PL N G++ GWFCPCHGS YD SGR+R+GPAP NL VP Y F+ + K+
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPETDEARVKAGHDNWLVTIGICTHLGCVPLANQGEYDGWFCPCHGSQYDSSGRVRRGPAPLNLAVPPYTFISDKKI 174          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI_RICCN (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia conorii GN=petA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.732e-43
Identity = 79/135 (58.52%), Postives = 101/135 (74.81%), Query Frame = 1
Query:  217 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKL 615
            S++ S DVLAL+S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V ++ L DP+ D  RVK  +  WLV +G+CTHLGC+PL N G++ GWFCPCHGS YD SGR+R+GPAP NL VP Y F+ + K+
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEADQARVKAGHDNWLVTIGICTHLGCVPLANQGEYDGWFCPCHGSQYDSSGRVRRGPAPLNLAVPPYTFISDKKI 174          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI_RHOCA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter capsulatus GN=petA PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.501e-42
Identity = 82/151 (54.30%), Postives = 106/151 (70.20%), Query Frame = 1
Query:  220 MSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVR------------------VKNPEWLVVVGVCTHLGCIPL-PNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKL 615
            M+AS DV A+AS+ VD+S++E GT +TVKWRGKPVFIRRR E+DI+LA SV + +LRD   ++                        EWLV++GVCTHLGC+P+   +GDFGGWFCPCHGSHYD +GRIRKGPAP NL++P+  F+DE  +
Sbjct:   38 MNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRDTSAENANKPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLGCVPMGDKSGDFGGWFCPCHGSHYDSAGRIRKGPAPRNLDIPVAAFVDETTI 188          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI_RHOVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodopseudomonas viridis GN=petA PE=3 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 8.047e-41
Identity = 83/168 (49.40%), Postives = 107/168 (63.69%), Query Frame = 1
Query:  121 DASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLAL-ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKL 615
            +A++R F Y        V A+ +  +   F+  M+     +A  A +++D+S +  G  V V WRGKP+FIR RT ++IQ   + DV +L DPQ DS RVK    EWLVV   CTHLGCIPL + GD+GGWFCPCHGS YD SGR+RKGPAP NL VP Y F+D  K+
Sbjct:    8 EATRRDFLYVATAA---VGAAGVAAVAWPFITQMNPDAATIAAGAPIDIDISPVTEGQIVRVFWRGKPIFIRHRTAKEIQSEEAADVGALIDPQPDSARVKPGKAEWLVVYASCTHLGCIPLGHQGDWGGWFCPCHGSQYDASGRVRKGPAPTNLPVPPYEFVDNTKI 172          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI_RHOSH (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter sphaeroides GN=petA PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.341e-40
Identity = 84/178 (47.19%), Postives = 110/178 (61.80%), Query Frame = 1
Query:  127 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRV--------------KNPEWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKL 615
            ++R F Y+   G   V        +   +  M+ S DV ALAS+ VD+SS+EPG  +TVK+ GKP+FIRRRTE DI+L  SV +  L D    +  +              +  EWLV+ GVCTHLGC+P+   +GDFGGWFCPCHGSHYD +GRIRKGPAP NL +P+  F+DE  +
Sbjct:   10 TRRDFLYYATAGAGAVATGAA---VWPLINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPENLPIPLAKFIDETTI 184          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI_BRAJA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Bradyrhizobium japonicum GN=petA PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.862e-38
Identity = 74/139 (53.24%), Postives = 98/139 (70.50%), Query Frame = 1
Query:  208 FVLSMSASKDVLAL-ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKN--PEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKL 615
            F+  M+     +A  A +EVDLS I  G  + V WRGKP++I  RT++ I  A +V+VASL DPQ D  RVK+   +WLVV+G+CTHLGCIP+ + G++ G+FCPCHGS YD SGRIR+GPAP NL VP Y F+ + K+
Sbjct:   35 FISQMNPDASTIAAGAPIEVDLSPIAEGQDIKVFWRGKPIYISHRTKKQIDEARAVNVASLPDPQSDEARVKSGHEQWLVVIGICTHLGCIPIAHEGNYDGFFCPCHGSQYDSSGRIRQGPAPANLPVPPYQFVSDTKI 173          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI_CHRVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Chromatium vinosum GN=petA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 59/160 (36.88%), Postives = 88/160 (55.00%), Query Frame = 1
Query:  199 ILKFVLSMSASKDVLAL-ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVD---------VASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPL---------PNAGDFGGWFCPCHGSHYDISGRIRKG-PAPFNLEVPMYNFLDENKLL 618
            ++ FV SM+ S    A  A +E D+S +EPG  + VKWRG PV++  R+ E +   +S D         V    D  ++  R   PE+LV +G+CTHLGC P            +G  GG+ CPCHGS +D++ R+ K  PAP NL +P + +L++  +L
Sbjct:   40 LVPFVASMNPSARARAAGAPVEADISKLEPGALLRVKWRGMPVWVVHRSSEMLAALSSNDPKLVDPTSEVPQQPDYCKNPTRSIKPEYLVAIGICTHLGCSPTYRPEFGPDDLGSGWKGGFHCPCHGSRFDLAARVFKNVPAPTNLVIPKHVYLNDTTIL 199          
The following BLAST results are available for this feature:
BLAST of CK939182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_RICPR7.776e-4458.52Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICTY1.732e-4359.26Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICFE1.732e-4358.52Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICCN1.732e-4358.52Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOCA2.501e-4254.30Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOVI8.047e-4149.40Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOSH2.341e-4047.19Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_BRAJA2.862e-3853.24Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_CHRVI1.427e-2136.88Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004433_A11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939182 ID=CK939182; Name=CK939182; organism=Citrus sinensis; type=EST; length=620bp
GGGAGTCTAGGACGTGATTTGGGTCTGATCTCAGACCTTCCAGCTACTGT
GGCAGCTGTGAAGAACCCAACTTCAAAAATTGTCTATGATGAGCACAATC
ATGAGCGTTATCCACCTGGTGACGCCAGCAAGCGTGCATTTGCTTATTTT
ATCTTGACAGGTGGCAGGTTTGTGTATGCCTCCTTAATTCGTCTTTTGAT
CCTCAAGTTTGTTCTTAGCATGTCTGCGAGCAAAGATGTCCTTGCCCTTG
CCTCCCTTGAGGTTGACCTATCCAGCATTGAACCCGGGACTACTGTTACA
GTCAAGTGGCGTGGGAAGCCAGTTTTCATCAGGCGTCGGACTGAAGAGGA
TATTCAGTTGGCTAACAGTGTTGATGTAGCGTCACTCCGGGACCCACAGG
AAGATTCTGTCAGGGTTAAGAATCCAGAATGGCTTGTCGTTGTTGGTGTG
TGCACACATTTGGGGTGCATTCCTTTACCAAATGCTGGTGACTTTGGAGG
TTGGTTCTGCCCCTGCCATGGTTCGCACTATGACATATCTGGCAGGATCC
GCAAGGGGCCAGCACCATTCAATCTAGAGGTACCCATGTACAATTTCTTG
GACGAGAACAAGTTACTGGA
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