CK939155

Overview
NameCK939155
Unique NameCK939155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL35_WHEAT (60S ribosomal protein L35 OS=Triticum aestivum GN=RPL35 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.823e-18
Identity = 47/81 (58.02%), Postives = 62/81 (76.54%), Query Frame = 2
Query:   44 NKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 286
            +KL++I  +R SIA+VLTVI+ KQ+A LR  YKNKK+ PLD R K+TRAIRRRL+  + S   E+ KKR ++FP RK+AIK
Sbjct:   43 SKLNRIHDIRKSIARVLTVINAKQRAQLRLFYKNKKYAPLDLRAKQTRAIRRRLSPDEKSRVLEKTKKRTVHFPQRKFAIK 123          
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL35_THEPA (60S ribosomal protein L35 OS=Theileria parva GN=RPL35 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.237e-15
Identity = 45/96 (46.88%), Postives = 62/96 (64.58%), Query Frame = 2
Query:    2 LALIPEAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 289
            LA    +KVT    +KLSKI +VR ++A+VLTV +Q++K   R+ YK     PL+ RPK TRA R+ LT  Q ++KT +E+KR    P RKYA+ V
Sbjct:   28 LATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKALTTKQLTMKTIKERKRAENLPKRKYALLV 123          
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL36_THELE (60S ribosomal protein L35 OS=Theileria lestoquardi GN=RPL35 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.815e-15
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 2
Query:    2 LALIPEAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAI 283
            LA    +KVT    +KLSKI +VR ++A+VLTV +Q++K   R+ YK     PL+ RPK TRA R+ LT  Q ++KT +E+KR    P RKYA+
Sbjct:   28 LATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKALTTKQLTMKTIKERKRAENLPKRKYAL 121          
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL35_THEAN (60S ribosomal protein L35 OS=Theileria annulata GN=RPL35 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.983e-15
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 2
Query:    2 LALIPEAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAI 283
            LA    +KVT    +KLSKI +VR ++A+VLTV +Q++K   R+ YK     PL+ RPK TRA R+ LT  Q ++KT +E+KR    P RKYA+
Sbjct:   47 LATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKGLTTKQLTMKTIKERKRAENLPKRKYAL 140          
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL35_BABBO (60S ribosomal protein L35 OS=Babesia bovis GN=RPL35 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.196e-14
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 2
Query:   23 KVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 289
            KVT  + +KLS+I V+R +IA+VLTV +Q+++   R+ Y     +PL+ RPK TRA RR LT  Q  LKT +++K+   FP RKYA+ V
Sbjct:   35 KVTVTSTSKLSQIGVIRKAIAKVLTVYNQRKREEARKQYTKISEMPLNMRPKLTRAKRRALTPKQLHLKTIKQRKKCENFPKRKYALLV 123          
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL35_DICDI (60S ribosomal protein L35 OS=Dictyostelium discoideum GN=rpl35 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.398e-14
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 2
Query:    2 LALIPEAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKF--LPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 286
            L+ +  A+V    P+KL+KI  VR +IA+VLTV +Q QK  LR  Y  K    +P D R KKTRAIRRRLT  Q+ + T R  K    FP R +A+K
Sbjct:   29 LSSLRVAQVKSPNPSKLAKIGTVRKAIARVLTVFNQTQKNHLRAVYSKKSSSKIPTDLRYKKTRAIRRRLTNKQSKVVTLRVSKTATNFPQRVFAVK 125          
The following BLAST results are available for this feature:
BLAST of CK939155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_WHEAT2.823e-1858.0260S ribosomal protein L35 OS=Triticum aestivum GN=... [more]
RL35_THEPA2.237e-1546.8860S ribosomal protein L35 OS=Theileria parva GN=RP... [more]
RL36_THELE3.815e-1546.8160S ribosomal protein L35 OS=Theileria lestoquardi... [more]
RL35_THEAN4.983e-1546.8160S ribosomal protein L35 OS=Theileria annulata GN... [more]
RL35_BABBO7.196e-1447.1960S ribosomal protein L35 OS=Babesia bovis GN=RPL3... [more]
RL35_DICDI9.398e-1447.4260S ribosomal protein L35 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004433_E04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939155 ID=CK939155; Name=CK939155; organism=Citrus sinensis; type=EST; length=511bp
GCTCGCCCTCATTCCGGAAGCTAAGGTCACCGGCGGTGCCCCTAACAAGC
TATCCAAGATCAAGGTGGTGAGGTTGTCGATCGCACAAGTGTTGACTGTC
ATTTCACAAAAGCAGAAGGCTGCATTGAGGGAGGCATACAAGAATAAGAA
GTTCTTGCCCCTTGATCAGCGTCCCAAGAAGACCCGGGCTATCAGGAGAA
GGCTTACCAAGCACCAGGCTTCACTGAAGACCGAGCGGGAGAAGAAGAGG
GAGATGTACTTTCCCATGAGGAAGTACGCTATTAAGGTGTAGGCTAGAAT
CTTTTTCTAGGAGTATCTTGGTATCTTGCAGTGACGAACCTATTTTGTTG
ACAAATTTTTACTTTGTTACCTTTTCAAATATCATTTTTGTTCAATCTTA
TGTGTGTAAAACTTGAAGGGTGCATCTCAACCTANACAAGATGTGCTAGA
TTGTGATGGAATAGCAGTCAAGATAGGATTCCAAAAAAAAAAAAAAAAAN
NNAAANNAAAA
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