CK939154

Overview
NameCK939154
Unique NameCK939154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: LLDD_PSEFS (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas fluorescens (strain SBW25) GN=lldD PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.903e-11
Identity = 38/118 (32.20%), Postives = 57/118 (48.31%), Query Frame = 1 
Query:  145 LPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXLSFTXXXXXXXXXXXXXXXRFYQLYVFKKR 498
            LP+  +D+  GGA  EHT++ N      I+ R RIL +V  + L TT+   ++  P+I++P  L  +    GEV  A+AAA+      LS                  ++QLYV K R
Sbjct:   17 LPRFLFDYIDGGAYAEHTMRANSSDLAEISLRQRILRNVDNLSLKTTVFGQELDMPVILSPVGLTGMYARRGEVQAAKAAANKGVPFCLSTVSVCPIEEVASQSARAIWFQLYVLKDR 134
[Close]
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAE (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 39/118 (33.05%), Postives = 56/118 (47.46%), Query Frame = 1 
Query:  145 LPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXLSFTXXXXXXXXXXXXXXXRFYQLYVFKKR 498
            LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP  L  +    GEV  ARAAA+      LS                  ++QLYV K R
Sbjct:   17 LPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDR 134
[Close]
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAB (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 39/118 (33.05%), Postives = 56/118 (47.46%), Query Frame = 1 
Query:  145 LPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXLSFTXXXXXXXXXXXXXXXRFYQLYVFKKR 498
            LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP  L  +    GEV  ARAAA+      LS                  ++QLYV K R
Sbjct:   17 LPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDR 134
[Close]
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA8 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain LESB58) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 39/118 (33.05%), Postives = 56/118 (47.46%), Query Frame = 1 
Query:  145 LPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXLSFTXXXXXXXXXXXXXXXRFYQLYVFKKR 498
            LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP  L  +    GEV  ARAAA+      LS                  ++QLYV K R
Sbjct:   17 LPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDR 134
[Close]
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA7 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain PA7) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 39/118 (33.05%), Postives = 56/118 (47.46%), Query Frame = 1 
Query:  145 LPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXLSFTXXXXXXXXXXXXXXXRFYQLYVFKKR 498
            LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP  L  +    GEV  ARAAA+      LS                  ++QLYV K R
Sbjct:   17 LPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDR 134
[Close]
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: LLDD_CHRSD (L-lactate dehydrogenase [cytochrome] OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=lldD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.246e-11
Identity = 40/118 (33.90%), Postives = 55/118 (46.61%), Query Frame = 1 
Query:  145 LPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXLSFTXXXXXXXXXXXXXXXRFYQLYVFKKR 498
            LP   + +  GGA  EHTL+ NVE    I  R R+L D+S + L T +    ++ P+ +AP  L  +    GEV  ARAAAS      LS                  ++QLYV + R
Sbjct:   17 LPPFLFHYADGGAYAEHTLRRNVEDLAGIALRQRVLKDMSHLSLETELFGEPLAMPVALAPVGLAGMYARRGEVQAARAAASKGIPFTLSTVSVCPIAEVASAIERPLWFQLYVLRDR 134
[Close]
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPW (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain W619) GN=lldD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 39/118 (33.05%), Postives = 55/118 (46.61%), Query Frame = 1 
Query:  145 LPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXLSFTXXXXXXXXXXXXXXXRFYQLYVFKKR 498
            LP   + +  GGA  EHTL+ NV     I  R R+L ++S + L T + D  +S P+ +AP  L  +    GEV  ARAAA+      +S                  ++QLYV K R
Sbjct:   17 LPPFLFHYADGGAYAEHTLRHNVSDLAGIALRQRVLKNMSELSLETRLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVAPAIDRPMWFQLYVLKDR 134
[Close]
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 38/118 (32.20%), Postives = 57/118 (48.31%), Query Frame = 1 
Query:  145 LPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXLSFTXXXXXXXXXXXXXXXRFYQLYVFKKR 498
            LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS                  ++QLYV + R
Sbjct:   17 LPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDR 134
[Close]
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 38/118 (32.20%), Postives = 57/118 (48.31%), Query Frame = 1 
Query:  145 LPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXLSFTXXXXXXXXXXXXXXXRFYQLYVFKKR 498
            LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS                  ++QLYV + R
Sbjct:   17 LPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDR 134
[Close]
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 38/118 (32.20%), Postives = 57/118 (48.31%), Query Frame = 1 
Query:  145 LPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXLSFTXXXXXXXXXXXXXXXRFYQLYVFKKR 498
            LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS                  ++QLYV + R
Sbjct:   17 LPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDR 134
The following BLAST results are available for this feature:
BLAST of CK939154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
LLDD_PSEFS1.903e-1132.20L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEAE2.486e-1133.05L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEAB2.486e-1133.05L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA82.486e-1133.05L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA72.486e-1133.05L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_CHRSD3.246e-1133.90L-lactate dehydrogenase [cytochrome] OS=Chromohalo... [more]
LLDD_PSEPW4.240e-1133.05L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_SHISS5.537e-1132.20L-lactate dehydrogenase [cytochrome] OS=Shigella s... [more]
LLDD_SHIFL5.537e-1132.20L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIF85.537e-1132.20L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004433_E03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939154 ID=CK939154; Name=CK939154; organism=Citrus sinensis; type=EST; length=503bp
CTTGACTTTGACTCTGCCCCCGACTCACTGTTGTAATCTGCCTCACGATC
GACCTTCATCGGTTGAAATTTTTAGTCATTCGGGTTCCAAATGGCGGCTG
AACCTGTTAATTTGAATGAGTTCCAAGAATTGGGGGGGCTGGCCCTTCCA
AAAATGTATTATGATTTCTACGCTGGTGGAGCAGAAGATGAACATACCCT
AAAAGAGAATGTGGAAGCCTTTCATAGAATTACGTTTCGGTCGAGAATTC
TTGTCGATGTCAGCAGAATTGATTTATCGACTACCATACTTGATTACAAA
ATCTCGGCTCCCATTATCATTGCTCCGACGGCTTTGCATAAGCTTGCAAA
CCCTGAAGGAGAGGTAGCCACAGCCAGAGCAGCAGCTTCATGTAACACCA
GAATGNTTTTATCCTTCACATCTAGCAGCTCCATAGAGGAGGTTGCGGCC
AGCTCCAATGCTGTTCGCTTCTATCAATTATATGTATTCAAGAAACGAGA
TAT
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