CK939147 | Citrus Genome Database

Overview


Name	CK939147
Unique Name	CK939147
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	677

Libraries


Library Name	Type
Developing fruit albedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_MUSAC (Photosystem II reaction center protein L OS=Musa acuminata GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_MORIN (Photosystem II reaction center protein L OS=Morus indica GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_MONCA (Photosystem II reaction center protein L OS=Montinia caryophyllacea GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_METGY (Photosystem II reaction center protein L OS=Metasequoia glyptostroboides GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_MESCR (Photosystem II reaction center protein L OS=Mesembryanthemum crystallinum GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_MANES (Photosystem II reaction center protein L OS=Manihot esculenta GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_MAIZE (Photosystem II reaction center protein L OS=Zea mays GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_MAIRA (Photosystem II reaction center protein L OS=Maianthemum racemosum GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_MAGST (Photosystem II reaction center protein L OS=Magnolia stellata GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_LOLPR (Photosystem II reaction center protein L OS=Lolium perenne GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

The following BLAST results are available for this feature:

BLAST of CK939147 vs. ExPASy Swiss-Prot

BLAST of CK939147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181


Match Name	E-value	Identity	Description
PSBL_MUSAC	6.890e-15	100.00	Photosystem II reaction center protein L OS=Musa a...	[more]
PSBL_MORIN	6.890e-15	100.00	Photosystem II reaction center protein L OS=Morus ...	[more]
PSBL_MONCA	6.890e-15	100.00	Photosystem II reaction center protein L OS=Montin...	[more]
PSBL_METGY	6.890e-15	100.00	Photosystem II reaction center protein L OS=Metase...	[more]
PSBL_MESCR	6.890e-15	100.00	Photosystem II reaction center protein L OS=Mesemb...	[more]
PSBL_MANES	6.890e-15	100.00	Photosystem II reaction center protein L OS=Maniho...	[more]
PSBL_MAIZE	6.890e-15	100.00	Photosystem II reaction center protein L OS=Zea ma...	[more]
PSBL_MAIRA	6.890e-15	100.00	Photosystem II reaction center protein L OS=Maiant...	[more]
PSBL_MAGST	6.890e-15	100.00	Photosystem II reaction center protein L OS=Magnol...	[more]
PSBL_LOLPR	6.890e-15	100.00	Photosystem II reaction center protein L OS=Lolium...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004433_F07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_F07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK939147 ID=CK939147; Name=CK939147; organism=Citrus sinensis; type=EST; length=677bp
TTTTTTTTTTGGGGTCAATATCAGCAATGCAGTTCATCCAACGCTAAACC
TAATCGGAATTAGAGAGCTATGACACAATCAAACCCAAACGAACAAAATG
TTGAATTGAACCGTACCAGTCTCTACTGGGGGTTATTGCTCATTTTTGTA
CTTGCTGTTTTATTTTCCAATTACTTCTTCAATTAAGAGAAGAAAAGAGA
ATAGTATAAGAATCCAAAATAGTAGGAATTCTCTTATCCCATTCGGAAGA
AGCGCATCTTATAATTATCTATGACTGTTTATGTCTCTAGCGTGACCACT
TGCAAAAATGTGCAAAAATGTGGAGGGAAGCGGGATAAATGGCCGATACT
ACTGGAAGGATTCCCCTTTGGATAATAGGAACTGTAACTGGTATTCTTGT
GATCGGTTTAATAGGCATTTTCTTTTATGGTTCATATTCCGGATTAGGTT
CGTCCTTGTAGTAATCGAATGAACTGCGTTATAGACATAAAAGCGTAAGA
ACTCAAGGTACCCTGTCGTTCCCGTGCTTTGTCTGATTCGAGGGGTAGGG
CCAGGGCCCCTTGAGTTCTTAATAAACATAATATTTTGGTTTGCTCGTAT
AAATGGAAAAAACGGATCGCTTTTTCCGATGCTTCAAAAAAATCCATTTC
ATTTTTTTCTGATTTCTGATGATTTTT