CK939138

Overview
NameCK939138
Unique NameCK939138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939138 vs. ExPASy Swiss-Prot
Match: ACTSA_TAKRU (Actin, alpha skeletal muscle A OS=Takifugu rubripes GN=acta1a PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 1.735e-90
Identity = 156/175 (89.14%), Postives = 166/175 (94.86%), Query Frame = 3 
Query:   24 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFGTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 548
            M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMF TFNVPAMYVAIQAVLSLYASGRTTGIVLD+GDGV+H VP+YEGYALPH
Sbjct:    1 MCDDDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDAGDGVTHNVPVYEGYALPH 175
[Close]
BLAST of CK939138 vs. ExPASy Swiss-Prot
Match: ACTC_BIOTE (Actin, cytoplasmic OS=Biomphalaria tenagophila PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 1.735e-90
Identity = 159/171 (92.98%), Postives = 164/171 (95.91%), Query Frame = 3 
Query:   36 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFGTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 548
            ED+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPH
Sbjct:    4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPH 174
[Close]
BLAST of CK939138 vs. ExPASy Swiss-Prot
Match: ACTC_BIOPF (Actin, cytoplasmic OS=Biomphalaria pfeifferi PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 1.735e-90
Identity = 159/171 (92.98%), Postives = 164/171 (95.91%), Query Frame = 3 
Query:   36 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFGTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 548
            ED+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPH
Sbjct:    4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPH 174
[Close]
BLAST of CK939138 vs. ExPASy Swiss-Prot
Match: ACTC_BIOOB (Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 1.735e-90
Identity = 159/171 (92.98%), Postives = 164/171 (95.91%), Query Frame = 3 
Query:   36 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFGTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 548
            ED+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPH
Sbjct:    4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPH 174
[Close]
BLAST of CK939138 vs. ExPASy Swiss-Prot
Match: ACT3_DICDI (Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 SV=3)

HSP 1 Score: 331.643 bits (849), Expect = 1.735e-90
Identity = 156/173 (90.17%), Postives = 168/173 (97.11%), Query Frame = 3 
Query:   30 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFGTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 548
            ++ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPR+TGVMVGMGQKD+Y+GDEAQS++GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGY+LPH
Sbjct:    2 ESEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRYTGVMVGMGQKDSYIGDEAQSRKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYSLPH 174
[Close]
BLAST of CK939138 vs. ExPASy Swiss-Prot
Match: ACTF_STRPU (Actin, cytoskeletal 3B OS=Strongylocentrotus purpuratus GN=CYIIIB PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 159/171 (92.98%), Postives = 164/171 (95.91%), Query Frame = 3 
Query:   36 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFGTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 548
            +D+  LV DNG+GMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVPIYEGYALPH
Sbjct:    4 DDVAALVVDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPH 174
[Close]
BLAST of CK939138 vs. ExPASy Swiss-Prot
Match: ACTE_STRPU (Actin, cytoskeletal 3A OS=Strongylocentrotus purpuratus GN=CYIIIA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 159/171 (92.98%), Postives = 164/171 (95.91%), Query Frame = 3 
Query:   36 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFGTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 548
            +D+  LV DNG+GMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVPIYEGYALPH
Sbjct:    4 DDVAALVVDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPH 174
[Close]
BLAST of CK939138 vs. ExPASy Swiss-Prot
Match: ACTD_STRPU (Actin, cytoskeletal 2B OS=Strongylocentrotus purpuratus GN=CYIIB PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 159/171 (92.98%), Postives = 164/171 (95.91%), Query Frame = 3 
Query:   36 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFGTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 548
            +D+  LV DNG+GMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVPIYEGYALPH
Sbjct:    4 DDVAALVIDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPH 174
[Close]
BLAST of CK939138 vs. ExPASy Swiss-Prot
Match: ACTC_STRPU (Actin, cytoskeletal 2A OS=Strongylocentrotus purpuratus GN=CYIIA PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 159/171 (92.98%), Postives = 164/171 (95.91%), Query Frame = 3 
Query:   36 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFGTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 548
            +D+  LV DNG+GMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVPIYEGYALPH
Sbjct:    4 DDVAALVVDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPH 174
[Close]
BLAST of CK939138 vs. ExPASy Swiss-Prot
Match: ACTC_PISOC (Actin, cytoplasmic OS=Pisaster ochraceus PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 159/171 (92.98%), Postives = 163/171 (95.32%), Query Frame = 3 
Query:   36 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFGTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 548
            ED+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVPIYEGYALPH
Sbjct:    4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPH 174
The following BLAST results are available for this feature:
BLAST of CK939138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 466
Match NameE-valueIdentityDescription
ACTSA_TAKRU1.735e-9089.14Actin, alpha skeletal muscle A OS=Takifugu rubripe... [more]
ACTC_BIOTE1.735e-9092.98Actin, cytoplasmic OS=Biomphalaria tenagophila PE=... [more]
ACTC_BIOPF1.735e-9092.98Actin, cytoplasmic OS=Biomphalaria pfeifferi PE=3 ... [more]
ACTC_BIOOB1.735e-9092.98Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 ... [more]
ACT3_DICDI1.735e-9090.17Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 S... [more]
ACTF_STRPU2.266e-9092.98Actin, cytoskeletal 3B OS=Strongylocentrotus purpu... [more]
ACTE_STRPU2.266e-9092.98Actin, cytoskeletal 3A OS=Strongylocentrotus purpu... [more]
ACTD_STRPU2.266e-9092.98Actin, cytoskeletal 2B OS=Strongylocentrotus purpu... [more]
ACTC_STRPU2.266e-9092.98Actin, cytoskeletal 2A OS=Strongylocentrotus purpu... [more]
ACTC_PISOC2.266e-9092.98Actin, cytoplasmic OS=Pisaster ochraceus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004433_G11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939138 ID=CK939138; Name=CK939138; organism=Citrus sinensis; type=EST; length=593bp
GGGGAATCTAACTTTTATAAAAAATGGCCGATGCTGAGGATATTCAACCC
CTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGAGA
TGATGCTCCAAGGGCAGTATTCCCTAGTATTGTTGGTAGGCCTCGACACA
CTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCCTATGTTGGTGATGAG
GCCCAATCGAAAAGAGGTATTCTTACTTTGAAATACCCAATTGAGCACGG
TATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCATCATACCTTCT
ACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCTTCTCACTGAG
GCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATGTT
TGGAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAGGCTGTTCTAT
CTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGATTCTGGTGAT
GGTGTGTCTCATACTGTACCAATTTATGAGGGATATGCCCTTCCTCATGC
CATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCGCTGATGCA
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