CK939135

Overview
NameCK939135
Unique NameCK939135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939135 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.863e-20
Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = 1
Query:    4 HLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFSQELDSTSQERLKWVQKNYMIYNYCADAKRFPQGLPAEC 462
            +LWFDPT DFH YSILW+   I+F VD  PIRE K +  +G  FP ++PM +Y+++W+   WAT GG    ++ +AP+ A + +     C     +                  +QE+  + + ++   ++  M Y+YC D  R+   L +EC
Sbjct:  143 NLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFP-SKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYIARFSDLVLHGCPVDPIEQFPRCDEGAAEDMRA---AQEITPSQRSKMDVFRRRLMTYSYCYDRARYNVAL-SEC 290          
BLAST of CK939135 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.068e-15
Identity = 48/152 (31.58%), Postives = 75/152 (49.34%), Query Frame = 1
Query:    7 LWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFSQELDSTSQERLKWVQKNYMIYNYCADAKRFPQGLPAEC 462
            LWFDPT D+H+YS LWNP ++VF VD TPIR +  S++  V +P  Q M +  S+ N       G ++  D    P+ A ++    + C                      W  ++L S  +      +K Y+ Y+YC+D +R+P+ +P EC
Sbjct:  130 LWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVY--SKNPDVYYPSVQTMFLMGSVQN-------GSII--DPKQMPYIAKFQASKIEGC------KTEFMGIDKCTDPKFWWNRKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPK-VPQEC 263          
The following BLAST results are available for this feature:
BLAST of CK939135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH27_ARATH2.863e-2032.68Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH8.068e-1531.58Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004433_G08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939135 ID=CK939135; Name=CK939135; organism=Citrus sinensis; type=EST; length=638bp
GGGCACCTCTGGTTTGACCCCACTGCTGACTTTCACACCTATTCTATCCT
CTGGAATCCTCAGCGCATTGTCTTCTCTGTGGATGGTACTCCCATAAGAG
AGTTCAAGAACTCAGAGTCAATTGGAGTTGCATTCCCAAAGAATCAGCCA
ATGAGAATATACTCATCTCTCTGGAATGCTGATGACTGGGCTACAAGAGG
TGGCCTTGTCAAGACAGATTGGACGCATGCTCCCTTCACGGCTTCCTACA
GAAACTTCAACGCTGATGCCTGTGTCTGGTCTAATGGAAAATCTTCTTGC
GCTTCAAGTTCACCTTCCTCTCCATCCAGCAGCAGTGCCTGGTTCTCACA
AGAGCTTGATTCAACAAGTCAAGAAAGGCTGAAATGGGTGCAGAAGAATT
ACATGATTTACAATTATTGCGCTGATGCAAAGAGATTTCCCCAGGGACTC
CCTGCAGAATGCAGAACCTCTTAGAAGTTTTGCAAAATCAACACATACAT
CAAAAAAATTTATTCTTTTTGTCAATTCTTTGATTCTTTGTTGTATTTTG
TCGTCAATAAAATGGCAAATTAGTCCAACTTTCTCAATGTAATACAAAAT
TTAGCATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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