CK939126

Overview
NameCK939126
Unique NameCK939126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.481e-24
Identity = 58/68 (85.29%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF VETVEYKNISFTVWDV
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.481e-24
Identity = 58/68 (85.29%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF VETVEYKNISFTVWDV
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.481e-24
Identity = 58/68 (85.29%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF VETVEYKNISFTVWDV
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.481e-24
Identity = 58/68 (85.29%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF VETVEYKNISFTVWDV
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.533e-21
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 2
Query:  551 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            F+K FSRLF+ KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GF VETV YKNI F VWDV
Sbjct:    9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDV 72          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.615e-21
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 2
Query:  557 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            K+FS++F  KEMRILM GLDAAGKTTILYKLKLG+ VTTIPT+GF VETV YKN+ F VWDV
Sbjct:    3 KMFSKIFGNKEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 64          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.615e-21
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 2
Query:  557 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            KL S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GF VETV YKN+ F VWDV
Sbjct:    3 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 64          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F+++  R   K ++RILMVGLD +GKTTILYKLKLGE+VTT+PTIGF +ETVEYK I+FTVWD+
Sbjct:    1 MGARFSRIAKRFLPKSKVRILMVGLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYKGINFTVWDI 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.826e-21
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 2
Query:  557 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GF VETV YKN+ F VWDV
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 64          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.826e-21
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 2
Query:  557 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GF VETV YKN+ F VWDV
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 64          
The following BLAST results are available for this feature:
BLAST of CK939126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
ARF3_PONAB1.481e-2485.29ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE1.481e-2485.29ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN1.481e-2485.29ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN1.481e-2485.29ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF2_SCHPO1.533e-2178.13Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARF6_XENLA2.615e-2177.42ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF3_DROME2.615e-2177.42ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF4_ARATH4.460e-2167.65Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF6_RAT5.826e-2175.81ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG5.826e-2175.81ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004433_H10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939126 ID=CK939126; Name=CK939126; organism=Citrus sinensis; type=EST; length=743bp
GGGGAAGGCAAAAACCGCTCTCTTCCTCAGGCAAGTCGTTTTACTCTCTA
GTTGGTCTCGCTTAATCGTACGGTCTCTAGATCCTGATCTCTCCATTTTC
TTATTTGATTGATATCTCTAGTCTTTCTTGATCTCTATGTCTGATCTGGC
CTTGTTATTCTTCGATCTGCATGTTAATTGCGAGCCGTTGCTCGAATTGG
AAACATTTTTGTCTGTGATCTCCTCATTTCTCATCTTATACAACTTTGAA
TTATCGAAATTACGTATTGATGATTAAGATTTAGGTGTGTTTTATGTCTT
TATTGTATGATCTAACGTAATTGAGGTTTATTTCGTTCTTAAATTATTTC
TAAATGATATTTGGTTATTTTTTCAATTAGATCTAATAATTGCATTTTTG
TTAACCGAATCTTGTGGTGTTATGTAGATATGGTTGGGGCTTTCTTTTGT
TTGTTAGATTTTAATGCTATTGTAATGTTGGAGATGTGTGAACATGTCAT
CTGATCTCTGCATTGGTTGGTGCTTGCAGTTGTGAAAAATGGGGCTGTCT
TTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAAAGAGATGAGAATTCT
CATGGTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGTACAAGCTTA
AGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTTNNNGTAGAG
ACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGTCG
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