CK939073

Overview
NameCK939073
Unique NameCK939073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.220e-40
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 279
            VIK AIEKL  RH EHIAAYGEGNERRLTGRHETADINTFSWGVANRGAS+ VG+ TE+ GKGYFEDRRPASNMDPYVVTSMIAETTI+WKP
Sbjct:  265 VIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVAVGQ-TEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 355          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.598e-39
Identity = 76/92 (82.61%), Postives = 83/92 (90.22%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 279
            VIKKAI  L  RH EHI+AYGEGNERRLTG+HETA INTFSWGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYVVTS++AE+T+LW+P
Sbjct:  322 VIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTSLLAESTLLWEP 413          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.087e-39
Identity = 77/91 (84.62%), Postives = 85/91 (93.41%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 276
            VI KAIEKLG +H EHIAAYGEGNERRLTG+HETA+I+TF WGVANRGAS+RVGRDTEK GKGYFEDRRPASNMDPYVVT+MIA+TTI+ K
Sbjct:  265 VILKAIEKLGLKHKEHIAAYGEGNERRLTGKHETANISTFKWGVANRGASVRVGRDTEKAGKGYFEDRRPASNMDPYVVTAMIADTTIIGK 355          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.726e-39
Identity = 76/89 (85.39%), Postives = 86/89 (96.63%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 270
            +IK+AI+KL  +H +HIAAYGEGNERRLTG+HETADINTFSWGVA+RGAS+RVGRDTEKEGKGYFEDRRP+SNMDPY+VTSMIAETTIL
Sbjct:  265 LIKEAIKKLEVKHKQHIAAYGEGNERRLTGKHETADINTFSWGVADRGASVRVGRDTEKEGKGYFEDRRPSSNMDPYLVTSMIAETTIL 353          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA1_DAUCA (Glutamine synthetase cytosolic isozyme OS=Daucus carota GN=GLN1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.073e-39
Identity = 76/89 (85.39%), Postives = 83/89 (93.26%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 270
            +IKKAI KL  +H +HIAAYGEGNERRLTG+HETA I+ FSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNM+PYVVTSMIAETTIL
Sbjct:  264 IIKKAIAKLETKHAQHIAAYGEGNERRLTGKHETASIHKFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMEPYVVTSMIAETTIL 352          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.353e-38
Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 279
            VIKKAI  L  RH EHI+AYGEGNERRLTG+HETA I+ FSWGVANRG SIRVGRDTEK+GKGY EDRRPASNMDPY+VTS++AETT+LW+P
Sbjct:  321 VIKKAILNLSLRHMEHISAYGEGNERRLTGKHETASIDQFSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDPYIVTSLLAETTLLWEP 412          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.767e-38
Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 279
            VIKKAI  L  RH EHI+AYGEGNERRLTG+HETA I++FSWGVA+RG SIRVGRDTEKEGKGY EDRRPASNMDPYVVT ++AETT+LW+P
Sbjct:  325 VIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVADRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTGLLAETTLLWEP 416          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.937e-38
Identity = 74/92 (80.43%), Postives = 81/92 (88.04%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 279
            VIKKAI  L  RH  HI AYGEGNERRLTG+HETA INTFSWGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYVVT+++AE+T+LW+P
Sbjct:  321 VIKKAILNLSLRHKVHIEAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEP 412          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.141e-38
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 279
            VIKKAI  L  RH EHI+AYGEGNERRLTG+HETA I+ FSWGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY+VTS++AETT+LW+P
Sbjct:  323 VIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDQFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYIVTSLLAETTLLWEP 414          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.552e-37
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 279
            VIKKAI  L  RH  HI AYGEGNERRLTG+HETA IN FSWGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYVVT+++AE+T+LW+P
Sbjct:  323 VIKKAILNLSLRHKIHIEAYGEGNERRLTGKHETASINDFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEP 414          
The following BLAST results are available for this feature:
BLAST of CK939073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GLNA4_MAIZE3.220e-4088.04Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLNA4_PHAVU1.598e-3982.61Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA_NICPL2.087e-3984.62Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLN15_ARATH2.726e-3985.39Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLNA1_DAUCA6.073e-3985.39Glutamine synthetase cytosolic isozyme OS=Daucus c... [more]
GLNAC_BRANA1.353e-3880.43Glutamine synthetase, chloroplastic OS=Brassica na... [more]
GLNA2_DAUCA1.767e-3880.43Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA2_MEDSA3.937e-3880.43Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_ARATH5.141e-3879.35Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLNA2_PEA2.552e-3779.35Glutamine synthetase leaf isozyme, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004434_F08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939073 ID=CK939073; Name=CK939073; organism=Citrus sinensis; type=EST; length=634bp
GGGGTGATCAAGAAGGCAATTGAAAAGTTGGGGAAACGCCACGGGGAACA
CATTGCTGCTTATGGTGAGGGCAACGAAAGAAGACTGACAGGTCGACATG
AAACTGCAGATATCAACACTTTCTCTTGGGGTGTCGCTAACAGAGGTGCC
TCCATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGGATACTTTGA
AGACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGACTTCAATGA
TCGCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAACTTGAGCATG
GATGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATTGAACCCACC
ACAAAAATAATTCTTATGTTTTTATAATTTGTCTATGCATTTAAGTCTGT
TGTTTGAATTTGTTCCTTGCCATTCAAAACTGTGCTCTGTTTCTCTTGTA
CTTCATTGTTTGGGATGCTCAGTTGTGATTACTATATTATAGTTTAAAAC
TACTTCGCTTCTGTTTAAAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAATAAGTAAAAAAATTAAAAAAAAACAAAAAAAANNNNAAAAAAAAAA
AACTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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