CK939057

Overview
NameCK939057
Unique NameCK939057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939057 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4)

HSP 1 Score: 160.229 bits (404), Expect = 1.339e-38
Identity = 87/170 (51.18%), Postives = 107/170 (62.94%), Query Frame = 1
Query:  250 FYPADDVKEPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 759
            +YP++DV  P   ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LLV+GPFK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAKE                            +DQK VD  L+  I+  P LK YL A FSL+ G KPH L F
Sbjct:    9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176          
BLAST of CK939057 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.897e-38
Identity = 87/170 (51.18%), Postives = 106/170 (62.35%), Query Frame = 1
Query:  250 FYPADDVKEPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 759
            +YP++DV      ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LL+SGPFK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAKE                            +DQK VD  LI  I+  P LK YL A FSL+ G KPH L F
Sbjct:    9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176          
BLAST of CK939057 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.098e-32
Identity = 79/171 (46.20%), Postives = 105/171 (61.40%), Query Frame = 1
Query:  250 FYPADDVKEPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTST-KVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 759
            +YPA     P   ++  +PTKLRAS+ PGTV I+LAGRF+GKRVV L QL    L+V+GP+K+NGVP+RRVN  YVI TS  K+D+SGV+V+KF   YFAK+                             DQK+VD  L+ AI+A+P++K YL A F+L  G +PH + F
Sbjct:   27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195          
BLAST of CK939057 vs. ExPASy Swiss-Prot
Match: RL6_DICDI (60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.753e-30
Identity = 75/158 (47.47%), Postives = 94/158 (59.49%), Query Frame = 1
Query:  289 KRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 759
            K+  +   LR SITPGTVLIILAGRF GKRVV LKQL SGL+L++GPFK+NGVPLRR++Q YVI TSTK+D+S V V    +D YFA E                             DQKSVD+ ++  ++    L  YL  +F L+ G  PH+L F
Sbjct:   79 KKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDEKKAEKKKIADSRVADQKSVDSAILAVLKKEKFLTVYLKTKFYLKKGEFPHQLKF 236          
BLAST of CK939057 vs. ExPASy Swiss-Prot
Match: RL6_CAEEL (60S ribosomal protein L6 OS=Caenorhabditis elegans GN=rpl-6 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.366e-29
Identity = 91/245 (37.14%), Postives = 123/245 (50.20%), Query Frame = 1
Query:   61 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKEPLVNKR-------KPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDTPLIKAIEAVPDLK---AYLGARFSLRAGMKPHELVF 759
            M  K+  P +SRN +L  G+ +FS S++  K+G    K                         F      K P + +          K   LR ++TPGTVLI+LAGR KGKRVVFLKQLP SGLLLV+GP KING PLRR+ Q++VI TS KV++SGV + +  +D+YF ++                             D K+VD P++ AI+  P+ K    YLG RFSL     PH++ F
Sbjct:    1 MVGKRNLPVISRNFDLSPGVLRFSASRLRLKKGEKKPK-------------------------FTKDTSAKLPKLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRK---STAQKTGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217          
The following BLAST results are available for this feature:
BLAST of CK939057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6B_YEAST1.339e-3851.1860S ribosomal protein L6-B OS=Saccharomyces cerevi... [more]
RL6A_YEAST3.897e-3851.1860S ribosomal protein L6-A OS=Saccharomyces cerevi... [more]
RL6_SCHPO1.098e-3246.2060S ribosomal protein L6 OS=Schizosaccharomyces po... [more]
RL6_DICDI1.753e-3047.4760S ribosomal protein L6 OS=Dictyostelium discoide... [more]
RL6_CAEEL7.366e-2937.1460S ribosomal protein L6 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004434_H10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939057 ID=CK939057; Name=CK939057; organism=Citrus sinensis; type=EST; length=860bp
GGGGGACGCTCGCACACGAAACTCTCATTCACGGAGGCACAGCAGAAGCG
GGTAGCATCAATGGCGCCGAAGCAAGGGAAGCCAAGAGTGAGCAGGAATC
CGGAGCTGATCCGAGGAATTGGAAAGTTCTCTCGTTCAAAGATGTACCAT
AAGAGGGGTCTGTGGGCAATTAAAGCCAAAAACGGTGGCGTCTTTCCTCG
TCACGACCCTAAGCCCAAAGCCGCTGCTCCCGCCGAGAAGCCCCCCAAGT
TTTACCCCGCCGATGACGTCAAGGAACCACTCGTCAACAAGCGCAAGCCT
AAACCCACCAAGCTTAGAGCAAGCATCACCCCAGGGACAGTGCTGATTAT
ACTAGCTGGAAGGTTCAAGGGTAAGAGAGTTGTGTTCCTGAAGCAGCTTC
CATCTGGGTTGCTTCTAGTTTCTGGGCCATTTAAGATCAATGGTGTTCCT
TTACGACGTGTGAACCAGTCTTACGTGATTGGAACTTCTACCAAAGTTGA
TATCTCCGGAGTGAATGTGGATAAGTTTGATGATAAGTATTTTGCCAAGG
AAGTCGAGAGGAAGAAGAAGAAAGGAGAGAATGAGTTCTTTGAGTCAGAG
AAAGAGGAGAAGAAGTCGCTTCCTCAGGAGAAGAAGGATGATCAGAAGTC
CGTTGATACACCATTGATCAAGGCCATTGAGGCTGTTCCAGACTTGAAGG
CTTACCTTGGTGCTAGGTTTTCCCTCAGGGCCGGCATGAAACCTCATGAA
CTTGTCTTCTGAAAACATGTTGAAACAATTTAGGATTGCTTTGCTTTTTC
CTACTTGTTATGTTTTGTCTGAAATTTATTTTACCAGTTGTAATCTTTGT
TTCATGGGAT
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