CK939033

Overview
NameCK939033
Unique NameCK939033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939033 vs. ExPASy Swiss-Prot
Match: CHAC_SCHPO (Cation transport regulator-like protein OS=Schizosaccharomyces pombe GN=SPBC31F10.03 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 58/172 (33.72%), Postives = 78/172 (45.35%), Query Frame = 3
Query:  231 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQE-------------TICWGVAYCVRGGPEKERLAM-EYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 704
            WVFGYGSL+W+P   YD  I  FIK Y R F +   DHRGT   P    TL   +E               CWG+A+ +   P K    + EYL+ RE    +   V  Y       P L   +V+  T     +  +     L +MA+ I+T  G  G+N  YLF+L K +
Sbjct:   11 WVFGYGSLIWHPPPHYDYSIPCFIKGYVRRFWMRSEDHRGTVNSPGLVLTLIPYEEWKQFSDWSFTPFDEGCWGMAFRI---PAKYATQVREYLDDREVNGYTAHSVPVYAHTGDEIPVLENCLVYVGTS---KSPQFQPSDDLTQMAKIISTRRGKSGDNFVYLFELAKCL 176          
BLAST of CK939033 vs. ExPASy Swiss-Prot
Match: CHAC_YEAST (Cation transport regulator-like protein OS=Saccharomyces cerevisiae GN=YER163C PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 55/198 (27.78%), Postives = 84/198 (42.42%), Query Frame = 3
Query:  231 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTL-------------------------EKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTG---------------VIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 704
            WV GYGSL++ P   Y  +I   I  + R F  +  DHRGTP +P R  TL                         +   + +  GV Y +   PE  +   EYL  RE    +   V+ + E      A  G               V++ +     + N+ ++GP  ++E A+ IA + GP G+N +YL KLE+A+
Sbjct:    9 WVLGYGSLIYKPPSHYTHRIPAIIHGFARRFWQSSTDHRGTPANPGRVATLIPYEDIIRQTAFLKNVNLYSESAPIQDPDDLVTIGVVYYI--PPEHAQEVREYLNVREQNGYTLHEVEVHLETNREHEAELGEALEQLPRHNKSGKRVLLTSVYIGTIDNEAFVGPETVDETAKVIAVSHGPSGSNYEYLAKLEQAL 204          
BLAST of CK939033 vs. ExPASy Swiss-Prot
Match: CHAC_ECOLI (Cation transport protein chaC OS=Escherichia coli (strain K12) GN=chaC PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 52/162 (32.10%), Postives = 72/162 (44.44%), Query Frame = 3
Query:  231 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIG 716
            W+FGYGSL+WNP  E+ E   G +  + R F L     RGT   P R   L++   T   GVAY +   PE E L  E     + E  +   +  + + +         IVF   P    +  Y      + +A  IA A GP G N  YLF LE+ +  +G
Sbjct:   48 WIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGGRTT--GVAYRL---PE-ETLEQELTLLWKREMITGCYLPTWCQLDLDDGRTVNAIVFIMDP---RHPEYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLG 200          
The following BLAST results are available for this feature:
BLAST of CK939033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CHAC_SCHPO2.210e-1433.72Cation transport regulator-like protein OS=Schizos... [more]
CHAC_YEAST7.110e-1327.78Cation transport regulator-like protein OS=Sacchar... [more]
CHAC_ECOLI3.529e-1232.10Cation transport protein chaC OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004435_A11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IVF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939033 ID=CK939033; Name=CK939033; organism=Citrus sinensis; type=EST; length=718bp
GGGGATATAAAAAGGCGTGTTTATATAACTCGCAACCTCCATCCCTCTCT
TTGCTCGTGTCTCAATTGCACCCACACGAGAGACGGGGAGAGAGAGAGAG
AGAGAGGAAGCGAAGAGAAATAGAAAGAGAGAATACAGAATCCTAACCTT
AGGCGTTTTAGCTTGTTTCGTTTCCCTCTTTTGCTTCAAGTTTCTTCCTT
TCTCTCGCGATTTCCTTGAAAATGGTGTTCTGGGTTTTTGGGTATGGATC
ATTGGTGTGGAACCCAGGGTTTGAATATGATGAGAAAATTTTAGGCTTCA
TCAAGGACTACAGGCGCGTGTTTGATCTTGCATGCATTGATCACAGGGGT
ACACCTCAACACCCGGCTAGAACTTGCACGCTGGAAAAATCTCAAGAAAC
CATTTGTTGGGGTGTTGCTTATTGTGTCCGAGGAGGTCCCGAAAAGGAAA
GACTCGCTATGGAGTATTTGGAACGAAGAGAATGCGAGTACGACTCTAAG
ACCCTTGTAGACTTTTACAGGGAAGGGGAGCCTTCACAGCCGGCTCTAAC
TGGGGTTATAGTTTTCACGTCTACTCCAGACAAAGTATCAAACAAGTATT
ATCTGGGGCCTGCTCCATTGGAGGAAATGGCTAGGCAAATTGCAACGGCT
GTCGGACCCTGTGGAAACAATAGAGACTACCTTTTCAAGTTGGAGAAGGC
CATGTTTGATATTGGTCA
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