CK939031

Overview
NameCK939031
Unique NameCK939031
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939031 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.215e-81
Identity = 152/194 (78.35%), Postives = 165/194 (85.05%), Query Frame = 1
Query:  151 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAVNNARPPTVQIKGQPV 732
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTAGQER RTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK RM    A    R P ++I   PV
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPV 193          
BLAST of CK939031 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 6.444e-81
Identity = 147/182 (80.77%), Postives = 162/182 (89.01%), Query Frame = 1
Query:  151 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAVNNA 696
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL+EIDRYA ENVNKLLVGNK DLT K+VVS + AK FA+ +GI F+ETSAK++ NVE+AFM M A IK RMA+ P    A
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPKA 182          
BLAST of CK939031 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 4.177e-80
Identity = 148/195 (75.90%), Postives = 164/195 (84.10%), Query Frame = 1
Query:  151 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAVNNARPPTVQIKGQPVN 735
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT E +GKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ+SFNNVKQWL EIDRYA E VN+LLVGNK D+ DKKVV Y  AK FAD + IPF+ETSAKDS NVEQAF+ M+  IK RM +    ++    +V++ GQ  N
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKV-GQGTN 194          
BLAST of CK939031 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 1.029e-78
Identity = 143/195 (73.33%), Postives = 169/195 (86.67%), Query Frame = 1
Query:  151 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI-KNRMASQPAVNNARPPTVQIKGQPV 732
            M+ E+DYLFKLLLIGDS VGKSC LLRFADDSY+DSYISTIGVDFKIRTVE +GKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD+TD ESFNNVKQWL+EIDRYA+++V KLLVGNKCDL + + V    A+A+A E+GIPF+ETSAK+S+NVE+AF+AM+A I K++  SQ A+       VQ+KG+P+
Sbjct:    1 MSNEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPI 195          
BLAST of CK939031 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 3.310e-77
Identity = 145/194 (74.74%), Postives = 161/194 (82.99%), Query Frame = 1
Query:  151 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAVNNARPPTVQIKGQPV 732
            MNP YD LFKLLLIGDSGVGKSCLLLRFADD Y +SYISTIGVDFKI+T+E DGKT+KLQIWDTAGQERF TITSSYYRGAHG ++VYDVTDQES+ NVKQWL EIDR+ASENVNKLLVGNK DLT KKVV   TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK +M    A    R P ++I   PV
Sbjct:    1 MNPGYDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGER-PNLKIDSTPV 193          
BLAST of CK939031 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 5.646e-77
Identity = 143/196 (72.96%), Postives = 163/196 (83.16%), Query Frame = 1
Query:  151 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM-ASQPAVNNARPPTVQIKGQPVN 735
            MNP+Y YLFKLLLIGDSGVGKSCLLLRFADD+Y +S+ISTIGVDFKIRT+E +GKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTD+ +F NV+QWL EIDR+A ENVNKLLVGNK DL  KKVV + TAKAFAD + IPF+ETSAK S NVEQAFM M  +IKNR+ ASQP     +   V     P++
Sbjct:    1 MNPDYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQTVDKNKVVPGSSAPIS 196          
BLAST of CK939031 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 2.372e-75
Identity = 135/182 (74.18%), Postives = 153/182 (84.07%), Query Frame = 1
Query:  151 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAVNNA 696
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+  DGK +KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTD  SFNNVKQW+ EI RYA ++V +LLVGNKCDL +KK+V   TA+ +AD +GIPF+ETSAK S NVEQAFM M ++IK         NN+
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQPNNNS 182          
BLAST of CK939031 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 9.965e-74
Identity = 136/176 (77.27%), Postives = 149/176 (84.66%), Query Frame = 1
Query:  151 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQ 678
            MN EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y + YISTIGVDFKI+TVE DGKTVKLQIWDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+  V KLLVGNKCDL DK+VV Y+ AK FAD   +PF+ETSA DS NVE AF+ M   IK  M+ Q
Sbjct:    1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ 176          
BLAST of CK939031 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.206e-72
Identity = 133/192 (69.27%), Postives = 158/192 (82.29%), Query Frame = 1
Query:  151 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAVNNARPPTVQIKGQ 726
            M PE+D+ FK+LLIGDSGVGKSCLLLRFADDS+ D++ISTIGVDFKI+T+  DGKT+KLQIWDTAGQERFRTITSSYYRGA GII+VYD TDQ+SF NVKQW+ EIDRYA ENVNKLLVGNK DL ++KVV    AK+FA+  GIPF+ETSAK++ NVE+ F++M  DIKNR+A        +P  V IK +
Sbjct:    3 MAPEHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLAD--IQETPKPDEVDIKSK 192          
BLAST of CK939031 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.629e-66
Identity = 116/184 (63.04%), Postives = 153/184 (83.15%), Query Frame = 1
Query:  163 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAVNNARPPTVQ 714
            YDYL KLLLIGDSGVGKSCLLLRF++DS+  S+I+TIG+DFKIRT+E +GK +KLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD++SF N++ W+  I+++A+++VNK+L+GNKCD+ +KKVV     K+ ADE GI F+ETSAK+S+NVE+AF+++  DIK RM   P   N +P  VQ
Sbjct:   12 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTP---NEQPQVVQ 192          
The following BLAST results are available for this feature:
BLAST of CK939031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_PIG2.215e-8178.35Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
YPT1_PHYIN6.444e-8180.77Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
YPT1_SCHPO4.177e-8075.90GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
YPTM1_MAIZE1.029e-7873.33GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB1C_HUMAN3.310e-7774.74Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB1A_DICDI5.646e-7772.96Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB1B_DICDI2.372e-7574.18Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
YPT1_YEAST9.965e-7477.27GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1D_DICDI3.206e-7269.27Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB8A_DICDI2.629e-6663.04Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004435_A09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IVF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939031 ID=CK939031; Name=CK939031; organism=Citrus sinensis; type=EST; length=737bp
GGGGATCATCANNNTCATCGACATTTTGCTTTCTTCGTCAAATTCTCTCT
CAATCTCACATCCTTAGCTTGTCTGTGCCAAACTCCCGGTCCAATCTCCA
GCTGGACCGGTTCGATTCTGCGCGAACCCCCTCAACATCTTATTGCAGTC
ATGAATCCTGAATATGACTACTTGTTCAAGCTTTTGCTGATTGGAGATTC
TGGAGTTGGCAAATCATGTCTTCTTCTGAGATTTGCTGATGATTCGTACC
TGGACAGTTACATTAGCACTATTGGGGTTGACTTTAAAATTCGCACAGTG
GAGCAAGACGGGAAGACTGTAAAACTCCAAATTTGGGACACTGCAGGGCA
AGAACGATTCAGGACAATCACTAGCAGCTACTACCGTGGAGCACATGGCA
TTATTATTGTTTATGATGTTACAGACCAAGAGAGCTTCAACAACGTTAAG
CAGTGGTTGAATGAAATTGATCGCTATGCAAGTGAAAATGTAAACAAGCT
TCTGGTTGGAAACAAGTGTGATCTCACTGATAAGAAAGTTGTCTCTTATG
AAACAGCGAAGGCATTTGCTGATGAAATTGGCATCCCGTTCATGGAGACC
AGCGCAAAGGATTCTTTGAACGTGGAACAAGCTTTTATGGCTATGACTGC
TGACATTAAGAACAGGATGGCAAGTCAACCTGCAGTGAACAATGCAAGGC
CACCAACTGTGCAGATAAAAGGACAACCGGTGAACCA
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