CX675594
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: EMP24_SCHPO (Endosomal protein P24B OS=Schizosaccharomyces pombe GN=emp24 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.353e-11 Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 1 Query: 13 IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPET--VSFYIHVGHIPNEHNLAKDEHLD---PINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 423 + ++ +PAG ++H S ++ F G Y +CF N E+ V F +H G I DE LD P+ K+ +L + + V EQ+Y AR+ HR+T EST R+ ++I + V+L Q+ Y+++LF Sbjct: 58 VSMSIYNPAGQIMHQEVPNSMAQYSFTVKNPGKYMYCFYNDALDGESKEVLFNVH-GVI-----YISDEDLDANNPLLGKVRQLHDTISKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVILVSVCVFQIFYLKRLF 193
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: TMED3_HUMAN (Transmembrane emp24 domain-containing protein 3 OS=Homo sapiens GN=TMED3 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.767e-11 Identity = 44/154 (28.57%), Postives = 76/154 (49.35%), Query Frame = 1 Query: 4 HPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGH----IPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNR 447 H +D V P GN ++ D F ++A G+Y+FCF+N +ST +TV F VG +P+ N + L + + EAL++V+ Q + R R+ + R E R+ +++GE + L + S QVL ++ F++ +R Sbjct: 62 HYDVDCYVEDPQGNTIYRETKKQYDSFTYRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGN--RVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLLKSFFTEKRPISR 213
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: SEL9_CAEEL (Suppressor/enhancer of lin-12 protein 9 OS=Caenorhabditis elegans GN=sel-9 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.767e-11 Identity = 43/143 (30.07%), Postives = 70/143 (48.95%), Query Frame = 1 Query: 13 IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVG--HIPNEHNLAKDEHLDPINVK--IAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 423 ID +T P ++ + S KF F A G+Y +CF N ST P+ V F + + H A + D ++ + EL AL SV EQ+Y+ R+ HR+ NE+T R++ + E +L + Q+ Y+++ F Sbjct: 55 IDVKITGPDNKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKAVMFTVEITEPHQQAPGAAANQDAADNAKLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEAFVLVGMTVGQIFYLKRFF 197
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: TMEDA_RABIT (Transmembrane emp24 domain-containing protein 10 OS=Oryctolagus cuniculus GN=TMED10 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11 Identity = 40/137 (29.20%), Postives = 68/137 (49.64%), Query Frame = 1 Query: 25 VTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYI----HVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 423 +T AG+++++ + S KF F M++ CF + + I H N +AK E L P+ V++ L + ES+V++ Y++ R+ R TNEST R+L ++I L + QV Y+R+ F Sbjct: 76 ITDSAGHILYSKEDASKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFF 212 The following BLAST results are available for this feature:
BLAST of CX675594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX675594 ID=CX675594; Name=CX675594; organism=Citrus sinensis; type=EST; length=623bpback to top |