CX675594

Overview
NameCX675594
Unique NameCX675594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: EMP24_SCHPO (Endosomal protein P24B OS=Schizosaccharomyces pombe GN=emp24 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.353e-11
Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   13 IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPET--VSFYIHVGHIPNEHNLAKDEHLD---PINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 423
            +  ++ +PAG ++H     S  ++ F     G Y +CF N     E+  V F +H G I        DE LD   P+  K+ +L + +  V  EQ+Y  AR+  HR+T EST  R+  ++I + V+L      Q+ Y+++LF
Sbjct:   58 VSMSIYNPAGQIMHQEVPNSMAQYSFTVKNPGKYMYCFYNDALDGESKEVLFNVH-GVI-----YISDEDLDANNPLLGKVRQLHDTISKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVILVSVCVFQIFYLKRLF 193          
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: TMED3_HUMAN (Transmembrane emp24 domain-containing protein 3 OS=Homo sapiens GN=TMED3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.767e-11
Identity = 44/154 (28.57%), Postives = 76/154 (49.35%), Query Frame = 1
Query:    4 HPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGH----IPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNR 447
            H  +D  V  P GN ++       D F ++A   G+Y+FCF+N +ST   +TV F   VG     +P+  N  +   L  +      + EAL++V+  Q + R R+ + R   E    R+  +++GE + L + S  QVL ++  F++    +R
Sbjct:   62 HYDVDCYVEDPQGNTIYRETKKQYDSFTYRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGN--RVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLLKSFFTEKRPISR 213          
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: SEL9_CAEEL (Suppressor/enhancer of lin-12 protein 9 OS=Caenorhabditis elegans GN=sel-9 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.767e-11
Identity = 43/143 (30.07%), Postives = 70/143 (48.95%), Query Frame = 1
Query:   13 IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVG--HIPNEHNLAKDEHLDPINVK--IAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 423
            ID  +T P    ++  +  S  KF F A   G+Y +CF N  ST  P+ V F + +   H       A  +  D   ++  + EL  AL SV  EQ+Y+  R+  HR+ NE+T  R++ +   E  +L   +  Q+ Y+++ F
Sbjct:   55 IDVKITGPDNKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKAVMFTVEITEPHQQAPGAAANQDAADNAKLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEAFVLVGMTVGQIFYLKRFF 197          
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: TMEDA_RABIT (Transmembrane emp24 domain-containing protein 10 OS=Oryctolagus cuniculus GN=TMED10 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11
Identity = 40/137 (29.20%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   25 VTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYI----HVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 423
            +T  AG+++++ +  S  KF F      M++ CF +  +        I    H     N   +AK E L P+ V++  L +  ES+V++  Y++ R+   R TNEST  R+L ++I     L   +  QV Y+R+ F
Sbjct:   76 ITDSAGHILYSKEDASKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFF 212          
The following BLAST results are available for this feature:
BLAST of CX675594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
EMP24_SCHPO1.353e-1130.99Endosomal protein P24B OS=Schizosaccharomyces pomb... [more]
TMED3_HUMAN1.767e-1128.57Transmembrane emp24 domain-containing protein 3 OS... [more]
SEL9_CAEEL1.767e-1130.07Suppressor/enhancer of lin-12 protein 9 OS=Caenorh... [more]
TMEDA_RABIT6.715e-1129.20Transmembrane emp24 domain-containing protein 10 O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_63D02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63D02-G3-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675594 ID=CX675594; Name=CX675594; organism=Citrus sinensis; type=EST; length=623bp
GATCACCCCGGCATTGATTTCACTGTGACATCTCCTGCTGGAAATGTTGT
ACACACTGTTAAGGGGACATCTGGAGACAAGTTTGAATTTAAGGCTCCAC
GAAGTGGGATGTACAAGTTCTGTTTTAATAATCCATATTCTACACCAGAA
ACAGTCTCTTTCTATATTCATGTGGGCCATATTCCCAATGAGCATAACCT
CGCCAAAGATGAACATCTAGACCCAATTAATGTGAAAATTGCTGAGTTGA
GGGAGGCATTGGAGTCTGTCGTGTCAGAGCAGAAGTACTTGAGAGCACGT
GATACTCGACATCGTCATACAAATGAGAGCACAAGAAAGCGTCTTTTAGG
CTACACAATTGGAGAATATGTTCTGCTGGCCATGGCAAGTGCCCTTCAAG
TGTTGTATATCCGCAAGCTCTTTAGCAAGTCAGTTGCATACAACCGGGTT
TGAAGCACCATATAGTTATTTGTCTGTTTAATTAACAAGAGGATGAATGT
TAAAGTTCAGGAAAATGTGTGAATTCTGCGGAAACTACACCCTGCGTTGG
TTTATATTATTCATTTCCAGCACTTCACAATAGATTTGAATTTTGAACGT
GNAANANAAAAAAAAAAAAAAAA
back to top