CX675593

Overview
NameCX675593
Unique NameCX675593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A_RAT (60S ribosomal protein L7a OS=Rattus norvegicus GN=Rpl7a PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.484e-48
Identity = 91/159 (57.23%), Postives = 122/159 (76.73%), Query Frame = -1
Query:  298 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 771
            D+  A+ L KL  KYRPE +  KK+RLL RA+ +A GK  V  K+P V++ G+N VT L+E  KAQLVVIAHDVDPIELVV+LPALCRKM +PYCI+KGK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:   88 DRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A_MOUSE (60S ribosomal protein L7a OS=Mus musculus GN=Rpl7a PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.484e-48
Identity = 91/159 (57.23%), Postives = 122/159 (76.73%), Query Frame = -1
Query:  298 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 771
            D+  A+ L KL  KYRPE +  KK+RLL RA+ +A GK  V  K+P V++ G+N VT L+E  KAQLVVIAHDVDPIELVV+LPALCRKM +PYCI+KGK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:   88 DRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A_MACFA (60S ribosomal protein L7a OS=Macaca fascicularis GN=RPL7A PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.484e-48
Identity = 91/159 (57.23%), Postives = 122/159 (76.73%), Query Frame = -1
Query:  298 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 771
            D+  A+ L KL  KYRPE +  KK+RLL RA+ +A GK  V  K+P V++ G+N VT L+E  KAQLVVIAHDVDPIELVV+LPALCRKM +PYCI+KGK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:   88 DRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A_HUMAN (60S ribosomal protein L7a OS=Homo sapiens GN=RPL7A PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.484e-48
Identity = 91/159 (57.23%), Postives = 122/159 (76.73%), Query Frame = -1
Query:  298 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 771
            D+  A+ L KL  KYRPE +  KK+RLL RA+ +A GK  V  K+P V++ G+N VT L+E  KAQLVVIAHDVDPIELVV+LPALCRKM +PYCI+KGK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:   88 DRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A_CHICK (60S ribosomal protein L7a OS=Gallus gallus GN=RPL7A PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 8.583e-47
Identity = 89/159 (55.97%), Postives = 119/159 (74.84%), Query Frame = -1
Query:  298 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 771
            D+  A+ L KL  KYRPE +  KK+RLL RA+ +A GK     K+P V++ G+N VT L+E  KAQLVVIAHDVDPIELVV+LPALCRKM +PYCI+K K+RLG +VH+KT + +  T V  EDK   +K++EA+K N+ND+Y+E+R+ WGG ++G KS
Sbjct:   88 DRQTATQLLKLAHKYRPETKQEKKQRLLARAEQKAAGKGDTPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKSKARLGRLVHRKTCTCVAFTQVNPEDKGALAKLVEAVKTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A_ANOGA (60S ribosomal protein L7a OS=Anopheles gambiae GN=RpL7A PE=3 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 6.151e-45
Identity = 84/159 (52.83%), Postives = 122/159 (76.73%), Query Frame = -1
Query:  298 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVE-AKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 771
            DK  A  + K+L KYRPE+  A+ +RL  +A+A+A GK    +K+   ++ G+N V  ++EQ KAQLV+IAHDVDPIELVV+LPALCRKM +PYCI+KGK+RLG++V++KT + + LT V+N DK   +K++E IK NFND+++++R+ WGGG++G KS
Sbjct:   94 DKPTAQQVMKMLEKYRPENPIARVQRLKAKAEAKAAGKEEPPSKRANQLRQGINSVVKMVEQKKAQLVIIAHDVDPIELVVYLPALCRKMGVPYCIIKGKARLGTLVYRKTCTCVALTQVENADKPNLAKLVETIKTNFNDRFDDIRRHWGGGLLGPKS 252          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A_CAEEL (60S ribosomal protein L7a OS=Caenorhabditis elegans GN=rpl-7A PE=1 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 1.086e-41
Identity = 81/159 (50.94%), Postives = 113/159 (71.07%), Query Frame = -1
Query:  298 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEA-KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 771
            D   A   FKLL KYRPE   AKK RL  RA+A A GK  E  K+P  V++G+N +T L+E  +AQLV+IAHDV+P+E+V+ LPALCRK  +PY I+KGK+ LG++V +KT + + L  V  EDK   +K++E +  NF++++EE+RK WGGG+M +KS
Sbjct:   89 DSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKS 247          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A_DICDI (60S ribosomal protein L7a OS=Dictyostelium discoideum GN=rpl7a PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.269e-38
Identity = 84/164 (51.22%), Postives = 117/164 (71.34%), Query Frame = -1
Query:  295 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEA---EGKTV-EAKKPIV-VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 771
            DKN A  LFKLL KYRPE+ + KK RLLK A+A A   +G+   +A+KP+  +++G++ VT LIE+ KA+LVVIAHDVDP+ELV++LP LCR+M++PYCIVK KSRLG +VH + AS + LT V + D  E + ++E+ K  FN+  E  RK WGG  +   ++
Sbjct:  103 DKNTAVHLFKLLDKYRPEEASVKKARLLKIAEARAATPKGQAAPKAEKPVQHLRFGIDSVTKLIEKKKAKLVVIAHDVDPVELVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCVALTGVNSADSNELALLVESAKQMFNNNSEH-RKTWGGNTLSGPAR 265          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A_PIG (60S ribosomal protein L7a (Fragment) OS=Sus scrofa GN=RPL7A PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.983e-35
Identity = 75/130 (57.69%), Postives = 98/130 (75.38%), Query Frame = -1
Query:  373 ASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEA 759
            A+ L K+  KYRPE +  KK+RLL RA+ +A  K  V  K+P V++ G+N VT L+E  KAQLVVIAHDVDPIELVV+LPALCRKM +PYCI+KGK+RLG +VH+KT + +  T V +EDK   +K++EA
Sbjct:    3 ATQLLKVAHKYRPETKQEKKQRLLARAEKKAAXKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEA 132          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A_ENCCU (60S ribosomal protein L7a OS=Encephalitozoon cuniculi GN=RPL7A PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.165e-27
Identity = 67/142 (47.18%), Postives = 91/142 (64.08%), Query Frame = -1
Query:  319 KLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGG 744
            +L +KYRPE++  K+ RL    Q+E   K     KPI+VK+GL HVT LIE  KA+LV+I+  VDPIE+V++LP LCRKM + Y IV+  + LG +V+ KT S +CL  V+ ED+  F ++L    A F D YE     WGG
Sbjct:   49 ELFMKYRPENKQEKRIRL----QSEDPKK---GPKPILVKFGLKHVTNLIETKKAKLVLISASVDPIEVVIFLPTLCRKMGVSYAIVENSTLLGKLVNLKTTSCVCLCDVRPEDEGSFKEMLRTADAIFLDNYETHLSTWGG 183          
The following BLAST results are available for this feature:
BLAST of CX675593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RL7A_RAT3.484e-4857.2360S ribosomal protein L7a OS=Rattus norvegicus GN=... [more]
RL7A_MOUSE3.484e-4857.2360S ribosomal protein L7a OS=Mus musculus GN=Rpl7a... [more]
RL7A_MACFA3.484e-4857.2360S ribosomal protein L7a OS=Macaca fascicularis G... [more]
RL7A_HUMAN3.484e-4857.2360S ribosomal protein L7a OS=Homo sapiens GN=RPL7A... [more]
RL7A_CHICK8.583e-4755.9760S ribosomal protein L7a OS=Gallus gallus GN=RPL7... [more]
RL7A_ANOGA6.151e-4552.8360S ribosomal protein L7a OS=Anopheles gambiae GN=... [more]
RL7A_CAEEL1.086e-4150.9460S ribosomal protein L7a OS=Caenorhabditis elegan... [more]
RL7A_DICDI3.269e-3851.2260S ribosomal protein L7a OS=Dictyostelium discoid... [more]
RL7A_PIG1.983e-3557.6960S ribosomal protein L7a (Fragment) OS=Sus scrofa... [more]
RL7A_ENCCU1.165e-2747.1860S ribosomal protein L7a OS=Encephalitozoon cunic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_63D01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63D01-G1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675593 ID=CX675593; Name=CX675593; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTTAAGATCACACAAAATCTATATAGGAATGTGGACTTGCAATA
CGTTCCTCATATCAAAAAGGCACATACTAATGGTGCAAACATATAACAGT
TCAGAAGTTCAATTAAAAATCTTAATAAGGTAAAATGCTAAGAGACTACA
TAGAAACATGTTCATTAAAATAAAAAGATGATGAAAGCACAAGAAATAAC
AAAACATTGGACTCTCTTAAGACTGAGCAAAATCCTAGGTCAGCCTCTGA
GCAGCTTCCTTAGCAAGAAGTTTCTCCTTGGCCTTGGTTTTTGCCTGTGA
TTTGGAGCCCATAATACCACCTCCCCACTTCTTTCTTAACTCCTCGTACT
TGTCGTTGAAGTTAGCCTTGATGGCCTCAAGGATCTTGCTGAATTCCATC
TTATCCTCATTCTTAACTGTTGTCAAACACAATACAGAAGCCGTCTTCTT
GTGGACAATCGATCCCAAACGTGATTTTCCTTTGACAATGCAGTATGGGA
TCTCCATCTTCCTGCACAAGGCAGGAAGCCAGACAACCAACTCAATCGGG
TCAACATCATGAGCAATGACAACCAATTGTGCCTTGTTCTGTTCAATGAG
GTATGTCACATGGTTCAAGCCATATTTCACAACAATAGGCTTCTTAGCCT
CCACAGTCTTCCCTTCAGCCTCAGCCTGAGCTCTCTTCAAAAGACGTTCC
TTCTTAGCAGCTCTATCCTCAGGCCTGTACTTGAGGAGCAACTTGAAAAG
ACTTGAGGCAAGATTCTTGTC
back to top