CX675591

Overview
NameCX675591
Unique NameCX675591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.464e-15
Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = -2
Query:  292 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 546
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++   ++A   A
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.464e-15
Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = -2
Query:  292 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 546
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++   ++A   A
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.830e-15
Identity = 43/93 (46.24%), Postives = 65/93 (69.89%), Query Frame = -2
Query:  268 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 546
            P+TA  + LA A P++Q+ +LGE +YP++ ++    A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++    QA   A + A  SL
Sbjct:  541 PLTA--SLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENAQKSAQPSL 628          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.614e-15
Identity = 42/90 (46.67%), Postives = 65/90 (72.22%), Query Frame = -2
Query:  277 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 546
            P+TA  + LA A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++    QA   A ++ S
Sbjct:  542 PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA---HQAKEAAQKVVS 626          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.944e-15
Identity = 38/75 (50.67%), Postives = 60/75 (80.00%), Query Frame = -2
Query:  322 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 546
            P+TA  + LA A P++Q+ +LGE L+PL++ +  + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct:  553 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 625          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.299e-14
Identity = 39/81 (48.15%), Postives = 62/81 (76.54%), Query Frame = -2
Query:  304 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 546
            P+TA  + LA A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++   ++A
Sbjct:  542 PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 620          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.215e-14
Identity = 37/83 (44.58%), Postives = 62/83 (74.70%), Query Frame = -2
Query:  292 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 540
            T  ++ LA+A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+L++LESPE+L++KV EA+ VL++   ++A   A
Sbjct:  539 TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKA 621          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.445e-14
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = -2
Query:  268 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 546
            P+TA  + LA A  ++Q+ +LGE +YPL+ ++    A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++    QA   A + A  SL
Sbjct:  541 PLTA--SLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKESAPKSAPQSL 628          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.418e-14
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = -2
Query:  328 IPRRDASVGQPMPITALSTA--LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 582
            +P R      P P      A  LA A+P +Q+ +LGE+LYPL+ + + + A K+TGMLLEMD  E+LHL+ES  AL+ KV EA+ VL
Sbjct:  555 MPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.199e-13
Identity = 47/115 (40.87%), Postives = 64/115 (55.65%), Query Frame = -2
Query:  259 ASVGQPMPITA---LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL---------RSVAQQQANNPADQLASLSLNEN 567
            A  G+P    A    + AL+ A P QQ+ +LGE+LYP ++  + + A K+TGMLLEM+ TE+L LLE  EAL+AKV EA+ V           S A  +A  P +     S  EN
Sbjct:  649 APAGRPEEAVAGGLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEALRAKVDEALNVYDEYMKNKGGESEATGEAAKPKEAAKETSTEEN 763          
The following BLAST results are available for this feature:
BLAST of CX675591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PABP1_HUMAN4.464e-1547.06Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN4.464e-1547.06Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
EPABA_XENLA5.830e-1546.24Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABPB_XENLA7.614e-1546.67Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABP4_HUMAN9.944e-1550.67Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABPA_XENLA1.299e-1448.15Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP3_HUMAN2.215e-1444.58Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
EPABB_XENLA6.445e-1446.24Embryonic polyadenylate-binding protein B OS=Xenop... [more]
PABP_CRYNE8.418e-1447.13Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPOR3.199e-1340.87Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63C12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63C12-E23-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675591 ID=CX675591; Name=CX675591; organism=Citrus sinensis; type=EST; length=835bp
TTTTTTTTTAAAAAAACATGAAGCAGCAGCCAGATCCAATTCAAAATAAT
TAGTCACAGAAATTGAAAACAGCAACCACGCTTAAAAATTGGAACAGTCA
AGCAAACAAATCATGTGGCCGAGCAGAATCCTACAGCATATCCAGGATCA
AACTACACAAACACCTACACCATCCATGCCAAAAACAAAGACTTTAATTG
TTTGAAACCACAACTAATCCAAACTTCTTCAATGACAGCAACGCGCTCAA
GAAACAAGGTTTTCATTCAGGGACAATGAAGCCAGTTGATCTGCTGGATT
ATTAGCCTGCTGCTGAGCAACACTCCTCAAAACCTCCATTGCCTCAGCTA
CTTTCGCCTTCAAAGCCTCTGGTGACTCAAGAAGATGCAAAACCTCTGTC
TGGTCCATCTCCAAGAGCATTCCCGTTACCTTAGCCGCTGCATCTCGCTC
CAGCTGCTCCACTAGAGGATATAAACTTTCACCCAGCAGCGTCCTTTGCT
GTTCTGGTGATGCATTTGCAAGAGCAGTAGACAAAGCCGTTATCGGCATA
GGTTGTCCAACAGATGCATCTCGCCGAGGTATGCCAGCGCCCATGTCAAC
GGGAACAGGGAGCATACCGCCAGGCATGACCCCTGGGAGGCATCTGGTGC
GGCATAATGGGGAGTGGCTGCTGGGTCTGTTGCACAGGTCCAGCACCACG
TCGTCCACCAGGACGCTGGCCCTGCTGACCTTGCGAGACCACTGGAACAA
AGAAGTTCGGCATCGGTGCCCCAGCAGGCCTCATTCCAGGAACAAGTTGC
TGCTGGTACCAAATCCAGCTTGAGGAATTATTGCT
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