CX675591

Overview
NameCX675591
Unique NameCX675591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.307e-13
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = -2
Query:  331 ASVGQPMPITALST-ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 567
            A  G+  P   L+  +LA A   QQ+ +LGE+LYP ++  + + A K+TGMLLEMD TE+L LLE  EAL+AKV EA+ V
Sbjct:  639 AGRGEEAPAAGLTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLLEDDEALRAKVDEALSV 718          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.216e-12
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = -2
Query:  289 PITALST-ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANN--PAD 546
            P  AL+  AL  A+P QQ+ +LGE+LYP ++  + + A K+TGMLLEMD TE+L LLE  +AL+AKV EA+ V     + +     PAD
Sbjct:  648 PAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSVYDEYMKNKGEGEAPAD 736          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.073e-12
Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = -2
Query:  331 GIPRRDASVGQP-----------MPITALSTA--LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 585
            G PR     GQP           +P T   TA  L    P QQ+ +LGE+LYP ++  + + A K+TGMLLEMD TE+L LLE  EAL+AKV EA+ V
Sbjct:  620 GGPRPQGGRGQPAAAPPAAGREEVPATGGLTAQTLNAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDEEALRAKVDEALSV 717          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.073e-12
Identity = 49/130 (37.69%), Postives = 66/130 (50.77%), Query Frame = -2
Query:  259 GIPRRDASVGQP-----------MPITALSTA--LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL--------RSVAQQQANNPADQLASLSLNEN 585
            G PR     GQP           +P T   TA  L+   P QQ+ +LGE+LYP ++  + + A K+TGMLLEMD  E+L LLE  EAL+AKV EA+ V            A  ++  P +  A  +  EN
Sbjct:  622 GGPRPQGGRGQPAAAPPAAGREEVPATGGLTAQTLSAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNNELLGLLEDEEALRAKVDEALSVYDEYMKNKGEGEAPAESAKPKEDAAETATEEN 751          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = -2
Query:  277 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 588
            AG P      G P  +     A+A+ +P QQ+ +LGE+++P ++ +  + A K+TGMLLEMD TE++ L+E+  AL++KV EA+ V     +QQ +    Q  S
Sbjct:  651 AGAPAGARGAGAPEGLQGQLAAVAD-NPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGALRSKVDEALAVYDDYVRQQGDGEGAQAPS 753          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.033e-12
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = -2
Query:  307 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 531
            S   A  +P+QQ+ +LGE+L+P ++ L+ D A K+TGMLLEMD  E+++LLE   AL AKV EAM V     + Q
Sbjct:  681 SQLTATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALVAKVNEAMAVYDEYVKSQ 755          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.879e-12
Identity = 36/75 (48.00%), Postives = 54/75 (72.00%), Query Frame = -2
Query:  322 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 546
            P+TA  + LA A   +Q+ ++GE LYPL+  +    A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL++
Sbjct:  530 PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQA 602          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.292e-11
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = -2
Query:  331 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 528
            + L+ A+P QQ+ +LGE+LYP + +++ + A K+TGMLLEMD +E+++L     AL+AKV EAM V
Sbjct:  653 SVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKVDEAMSV 718          
BLAST of CX675591 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = -2
Query:  322 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 489
            LLGE L+PLVE+LE   A K+TGMLLEMD++E+L LL+SPE L  +V EA EVL+S
Sbjct:  528 LLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKS 583          
The following BLAST results are available for this feature:
BLAST of CX675591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PABP_ASPTN9.307e-1350.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPCL1.216e-1247.19Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEOFI2.073e-1245.92Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPFU2.073e-1237.69Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_MAGGR2.708e-1237.50Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CHAGB6.033e-1248.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1L_HUMAN7.879e-1248.00Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
PABP_PHANO2.292e-1148.48Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPX_ARATH3.910e-1164.29Probable polyadenylate-binding protein At2g36660 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63C12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63C12-E23-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675591 ID=CX675591; Name=CX675591; organism=Citrus sinensis; type=EST; length=835bp
TTTTTTTTTAAAAAAACATGAAGCAGCAGCCAGATCCAATTCAAAATAAT
TAGTCACAGAAATTGAAAACAGCAACCACGCTTAAAAATTGGAACAGTCA
AGCAAACAAATCATGTGGCCGAGCAGAATCCTACAGCATATCCAGGATCA
AACTACACAAACACCTACACCATCCATGCCAAAAACAAAGACTTTAATTG
TTTGAAACCACAACTAATCCAAACTTCTTCAATGACAGCAACGCGCTCAA
GAAACAAGGTTTTCATTCAGGGACAATGAAGCCAGTTGATCTGCTGGATT
ATTAGCCTGCTGCTGAGCAACACTCCTCAAAACCTCCATTGCCTCAGCTA
CTTTCGCCTTCAAAGCCTCTGGTGACTCAAGAAGATGCAAAACCTCTGTC
TGGTCCATCTCCAAGAGCATTCCCGTTACCTTAGCCGCTGCATCTCGCTC
CAGCTGCTCCACTAGAGGATATAAACTTTCACCCAGCAGCGTCCTTTGCT
GTTCTGGTGATGCATTTGCAAGAGCAGTAGACAAAGCCGTTATCGGCATA
GGTTGTCCAACAGATGCATCTCGCCGAGGTATGCCAGCGCCCATGTCAAC
GGGAACAGGGAGCATACCGCCAGGCATGACCCCTGGGAGGCATCTGGTGC
GGCATAATGGGGAGTGGCTGCTGGGTCTGTTGCACAGGTCCAGCACCACG
TCGTCCACCAGGACGCTGGCCCTGCTGACCTTGCGAGACCACTGGAACAA
AGAAGTTCGGCATCGGTGCCCCAGCAGGCCTCATTCCAGGAACAAGTTGC
TGCTGGTACCAAATCCAGCTTGAGGAATTATTGCT
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