CK938986
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_POPTR (DNA-directed RNA polymerase subunit beta OS=Populus trichocarpa GN=rpoB PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 2.747e-45 Identity = 88/102 (86.27%), Postives = 90/102 (88.24%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 MLGDGN GMSTIPG N IQFEGFCRFI QGL EELYKFPKIED DQE EFQLFVETYQLVEP +KERDAVYES TYSSELYVS GLIWK+ DMQEQTIFIG Sbjct: 1 MLGDGNGGMSTIPGFNQIQFEGFCRFIDQGLAEELYKFPKIEDRDQEIEFQLFVETYQLVEPSIKERDAVYESLTYSSELYVSGGLIWKNSRDMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_POPAL (DNA-directed RNA polymerase subunit beta OS=Populus alba GN=rpoB PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 2.747e-45 Identity = 88/102 (86.27%), Postives = 90/102 (88.24%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 MLGDGN GMSTIPG N IQFEGFCRFI QGL EELYKFPKIED DQE EFQLFVETYQLVEP +KERDAVYES TYSSELYVS GLIWK+ DMQEQTIFIG Sbjct: 1 MLGDGNGGMSTIPGFNQIQFEGFCRFIDQGLAEELYKFPKIEDRDQEIEFQLFVETYQLVEPSIKERDAVYESLTYSSELYVSGGLIWKNSRDMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_DAUCA (DNA-directed RNA polymerase subunit beta OS=Daucus carota GN=rpoB PE=3 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 3.588e-45 Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 ML DGN GMSTIPG N IQFEGFCRF+ QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSE Y+S GLIWK+ DMQEQTIF+G Sbjct: 1 MLRDGNEGMSTIPGFNQIQFEGFCRFMDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSEFYISAGLIWKTSRDMQEQTIFLG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_VITVI (DNA-directed RNA polymerase subunit beta OS=Vitis vinifera GN=rpoB PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 4.685e-45 Identity = 88/102 (86.27%), Postives = 90/102 (88.24%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 M GN GMSTIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+ DMQEQTIFIG Sbjct: 1 MFRGGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTSRDMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_CHLSC (DNA-directed RNA polymerase subunit beta OS=Chloranthus spicatus GN=rpoB PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 4.685e-45 Identity = 87/102 (85.29%), Postives = 91/102 (89.22%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 ML DGN GMSTIPG N IQFEGFCRFI QGLTEEL+KFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYV GLIWK+ DMQEQT+FIG Sbjct: 1 MLRDGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELHKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVPAGLIWKTSRDMQEQTVFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_PLAOC (DNA-directed RNA polymerase subunit beta OS=Platanus occidentalis GN=rpoB PE=3 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 2.325e-44 Identity = 87/102 (85.29%), Postives = 89/102 (87.25%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 M DGN GMSTIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSE+YV GLIWK DMQEQTIFIG Sbjct: 1 MRRDGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSEVYVPAGLIWKPGRDMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_PANGI (DNA-directed RNA polymerase subunit beta OS=Panax ginseng GN=rpoB PE=3 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 2.325e-44 Identity = 89/103 (86.41%), Postives = 91/103 (88.35%), Query Frame = -1 Query: 2 MLGDG-NAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 ML DG N GMSTIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+ DMQEQTIF G Sbjct: 1 MLRDGKNEGMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTGRDMQEQTIFFG 103
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_LIRTU (DNA-directed RNA polymerase subunit beta OS=Liriodendron tulipifera GN=rpoB PE=3 SV=2) HSP 1 Score: 177.178 bits (448), Expect = 2.325e-44 Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 ML DGN GMSTIPG + IQFEGFCRFI QGLTEEL+KFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYV GLIWK+ DMQEQT+FIG Sbjct: 1 MLRDGNEGMSTIPGFSQIQFEGFCRFIDQGLTEELHKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVPAGLIWKTGRDMQEQTVFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_MORIN (DNA-directed RNA polymerase subunit beta OS=Morus indica GN=rpoB PE=3 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 3.966e-44 Identity = 87/102 (85.29%), Postives = 90/102 (88.24%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 ML GN +STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+ DMQEQTIFIG Sbjct: 1 MLEGGNEEISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTSRDMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_JASNU (DNA-directed RNA polymerase subunit beta OS=Jasminum nudiflorum GN=rpoB PE=3 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 5.180e-44 Identity = 87/102 (85.29%), Postives = 89/102 (87.25%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 MLGDGN GMSTIPGLN IQFEGFCRFI QGLTEEL KFPKIEDTDQE EFQLF+E YQLVEPL KERDAVYES TYSSE YVS GLIWK+ DMQEQTI IG Sbjct: 1 MLGDGNEGMSTIPGLNQIQFEGFCRFIDQGLTEELSKFPKIEDTDQEIEFQLFMERYQLVEPLRKERDAVYESLTYSSEFYVSAGLIWKTSRDMQEQTILIG 102 The following BLAST results are available for this feature:
BLAST of CK938986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 90
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Sequences
The
following sequences are available for this feature:
EST sequence >CK938986 ID=CK938986; Name=CK938986; organism=Citrus sinensis; type=EST; length=355bpback to top |