CK938986

Overview
NameCK938986
Unique NameCK938986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length355
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_POPTR (DNA-directed RNA polymerase subunit beta OS=Populus trichocarpa GN=rpoB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.747e-45
Identity = 88/102 (86.27%), Postives = 90/102 (88.24%), Query Frame = -1
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            MLGDGN GMSTIPG N IQFEGFCRFI QGL EELYKFPKIED DQE EFQLFVETYQLVEP +KERDAVYES TYSSELYVS GLIWK+  DMQEQTIFIG
Sbjct:    1 MLGDGNGGMSTIPGFNQIQFEGFCRFIDQGLAEELYKFPKIEDRDQEIEFQLFVETYQLVEPSIKERDAVYESLTYSSELYVSGGLIWKNSRDMQEQTIFIG 102          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_POPAL (DNA-directed RNA polymerase subunit beta OS=Populus alba GN=rpoB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.747e-45
Identity = 88/102 (86.27%), Postives = 90/102 (88.24%), Query Frame = -1
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            MLGDGN GMSTIPG N IQFEGFCRFI QGL EELYKFPKIED DQE EFQLFVETYQLVEP +KERDAVYES TYSSELYVS GLIWK+  DMQEQTIFIG
Sbjct:    1 MLGDGNGGMSTIPGFNQIQFEGFCRFIDQGLAEELYKFPKIEDRDQEIEFQLFVETYQLVEPSIKERDAVYESLTYSSELYVSGGLIWKNSRDMQEQTIFIG 102          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_DAUCA (DNA-directed RNA polymerase subunit beta OS=Daucus carota GN=rpoB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.588e-45
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = -1
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            ML DGN GMSTIPG N IQFEGFCRF+ QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSE Y+S GLIWK+  DMQEQTIF+G
Sbjct:    1 MLRDGNEGMSTIPGFNQIQFEGFCRFMDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSEFYISAGLIWKTSRDMQEQTIFLG 102          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_VITVI (DNA-directed RNA polymerase subunit beta OS=Vitis vinifera GN=rpoB PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.685e-45
Identity = 88/102 (86.27%), Postives = 90/102 (88.24%), Query Frame = -1
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            M   GN GMSTIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+  DMQEQTIFIG
Sbjct:    1 MFRGGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTSRDMQEQTIFIG 102          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_CHLSC (DNA-directed RNA polymerase subunit beta OS=Chloranthus spicatus GN=rpoB PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.685e-45
Identity = 87/102 (85.29%), Postives = 91/102 (89.22%), Query Frame = -1
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            ML DGN GMSTIPG N IQFEGFCRFI QGLTEEL+KFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYV  GLIWK+  DMQEQT+FIG
Sbjct:    1 MLRDGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELHKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVPAGLIWKTSRDMQEQTVFIG 102          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_PLAOC (DNA-directed RNA polymerase subunit beta OS=Platanus occidentalis GN=rpoB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.325e-44
Identity = 87/102 (85.29%), Postives = 89/102 (87.25%), Query Frame = -1
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            M  DGN GMSTIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSE+YV  GLIWK   DMQEQTIFIG
Sbjct:    1 MRRDGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSEVYVPAGLIWKPGRDMQEQTIFIG 102          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_PANGI (DNA-directed RNA polymerase subunit beta OS=Panax ginseng GN=rpoB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.325e-44
Identity = 89/103 (86.41%), Postives = 91/103 (88.35%), Query Frame = -1
Query:    2 MLGDG-NAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            ML DG N GMSTIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+  DMQEQTIF G
Sbjct:    1 MLRDGKNEGMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTGRDMQEQTIFFG 103          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_LIRTU (DNA-directed RNA polymerase subunit beta OS=Liriodendron tulipifera GN=rpoB PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 2.325e-44
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = -1
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            ML DGN GMSTIPG + IQFEGFCRFI QGLTEEL+KFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYV  GLIWK+  DMQEQT+FIG
Sbjct:    1 MLRDGNEGMSTIPGFSQIQFEGFCRFIDQGLTEELHKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVPAGLIWKTGRDMQEQTVFIG 102          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_MORIN (DNA-directed RNA polymerase subunit beta OS=Morus indica GN=rpoB PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.966e-44
Identity = 87/102 (85.29%), Postives = 90/102 (88.24%), Query Frame = -1
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            ML  GN  +STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+  DMQEQTIFIG
Sbjct:    1 MLEGGNEEISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTSRDMQEQTIFIG 102          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_JASNU (DNA-directed RNA polymerase subunit beta OS=Jasminum nudiflorum GN=rpoB PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.180e-44
Identity = 87/102 (85.29%), Postives = 89/102 (87.25%), Query Frame = -1
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            MLGDGN GMSTIPGLN IQFEGFCRFI QGLTEEL KFPKIEDTDQE EFQLF+E YQLVEPL KERDAVYES TYSSE YVS GLIWK+  DMQEQTI IG
Sbjct:    1 MLGDGNEGMSTIPGLNQIQFEGFCRFIDQGLTEELSKFPKIEDTDQEIEFQLFMERYQLVEPLRKERDAVYESLTYSSEFYVSAGLIWKTSRDMQEQTILIG 102          
The following BLAST results are available for this feature:
BLAST of CK938986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RPOB_POPTR2.747e-4586.27DNA-directed RNA polymerase subunit beta OS=Populu... [more]
RPOB_POPAL2.747e-4586.27DNA-directed RNA polymerase subunit beta OS=Populu... [more]
RPOB_DAUCA3.588e-4584.31DNA-directed RNA polymerase subunit beta OS=Daucus... [more]
RPOB_VITVI4.685e-4586.27DNA-directed RNA polymerase subunit beta OS=Vitis ... [more]
RPOB_CHLSC4.685e-4585.29DNA-directed RNA polymerase subunit beta OS=Chlora... [more]
RPOB_PLAOC2.325e-4485.29DNA-directed RNA polymerase subunit beta OS=Platan... [more]
RPOB_PANGI2.325e-4486.41DNA-directed RNA polymerase subunit beta OS=Panax ... [more]
RPOB_LIRTU2.325e-4484.31DNA-directed RNA polymerase subunit beta OS=Liriod... [more]
RPOB_MORIN3.966e-4485.29DNA-directed RNA polymerase subunit beta OS=Morus ... [more]
RPOB_JASNU5.180e-4485.29DNA-directed RNA polymerase subunit beta OS=Jasmin... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004435_G06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IVF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938986 ID=CK938986; Name=CK938986; organism=Citrus sinensis; type=EST; length=355bp
TTCCAATAAAAATAGTTTGTTCCTGCATGTCCCCTCGGCTTTTCCAAATT
AATCCTGGGGATACATATAATTCAGAAGAATACGTGAATGATTCATATAC
AGCATCTCTTTCTTTTAGCAAGGGTTCTACCAATTGATATGTTTCCACAA
ATAATTGAAATTCAGTTTCTTGATCTGTATCTTCAATTTTTGGAAACTTA
TAAAGCTCTTCTGTTAGGCCCTGATGAATGAACCTACAAAATCCTTCAAA
TTGTATCGGATTTAACCCAGGTATTGTAGACATTCCTGCATTTCCATCTC
CGAGCATTTTGAATTTCCCATTTATCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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