FC921799

Overview
NameFC921799
Unique NameFC921799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length323
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.564e-22
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ VSPLRRVNQ+I LL  GAREA+F NIK+IAECLA+ELI+A KGSS+SYAI++KDELERVA+S+R
Sbjct:  158 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.249e-21
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ VSPLRRVNQ+I LL  GAREA+F NIK+IAECLA+ELI+A KGSS+SYAI++KDELERVA+S+R
Sbjct:  134 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.249e-21
Identity = 50/71 (70.42%), Postives = 65/71 (91.55%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ +SPLRRVNQ+I L+T GAREA+F NIK+IAECLA+ELI+A KGSS+SYAI++KDE+ERVA+++R
Sbjct:  137 VRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.131e-21
Identity = 51/71 (71.83%), Postives = 64/71 (90.14%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ VSPLRRVNQ+I L+  GAREA+F NIK++AECLA+ELI+A KGSS+SYAI++KDELERVA+S+R
Sbjct:  160 VRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5_CAEEL (40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.783e-21
Identity = 51/71 (71.83%), Postives = 64/71 (90.14%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ V+PLRRVNQ+I LL  GAREA+F N+K+IAECLA+ELI+A KGSS+SYAI++KDELERVA+S+R
Sbjct:  140 VRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.199e-21
Identity = 49/71 (69.01%), Postives = 65/71 (91.55%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ +SPLRRV+Q+I LLT GARE++F NIK+IAECLA+ELI+A KGSS+SYAI++KDE+ERVA+++R
Sbjct:   84 VRRQAVDISPLRRVSQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 154          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.293e-18
Identity = 44/71 (61.97%), Postives = 59/71 (83.10%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ VSP+RRVN ++ LLT G R A+F NI+++AECLA+ELI+A KGS +SY+I++KD LER A+SHR
Sbjct:  120 VRRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALERTAKSHR 190          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.340e-14
Identity = 37/71 (52.11%), Postives = 54/71 (76.06%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VR  A+ VSPLRR+N ++ LL +G R  +F N KS+AECLA+E+++A K  + S+AI +K++LERVA S+R
Sbjct:   78 VRGQAVDVSPLRRINHALYLLIMGCRCGAFRNSKSLAECLADEIVNASKSYTGSFAIMKKEDLERVANSNR 148          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.384e-12
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 3
Query:    9 RPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            R ++ V+P RRV+Q++  +  GAR+ +F N K I ECLAEELI A +G   SYAI++K+E+ER+A S R
Sbjct:  137 RVSVDVAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEELILAARGDPRSYAIRQKEEIERIALSSR 205          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.870e-12
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            +RR ++ VSPL+R++ +IS L+ G R ASF N  ++AE +A ELI A   S +SYA+ +K E+ER+AQS+R
Sbjct:  138 MRRTSVDVSPLKRISIAISNLSAGIRNASFRNRITLAEAIANELIAASTNSQNSYAVNKKKEIERIAQSNR 208          
The following BLAST results are available for this feature:
BLAST of FC921799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RS5A_DROME9.564e-2274.6540S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5_RAT1.249e-2174.6540S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS52_ARATH1.249e-2170.4240S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS5B_DROME2.131e-2171.8340S ribosomal protein S5b OS=Drosophila melanogast... [more]
RS5_CAEEL2.783e-2171.8340S ribosomal protein S5 OS=Caenorhabditis elegans... [more]
RS5_NICPL6.199e-2169.0140S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS5_DICDI1.293e-1861.9740S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS5_ENTHI7.340e-1452.1140S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]
RS7_AERPE1.384e-1250.7230S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]
RS5_ENCCU6.870e-1249.3040S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionC06052E04T7 RindPdigS Citrus sinensis cDNA clone C06052E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921799 ID=FC921799; Name=FC921799; organism=Citrus sinensis; type=EST; length=323bp
CCGTCCGTCGTCCAGCCCTCCATGTGTCTCCCCTCCGTCGCGTGAACCAG
TCCATCTCTCTGCTCACCATCGGTGCCCGCGAGGCTTCTTTCCCCAACAT
CAAGAGCATTGCTGAGTGCCTTGCTGAGGAGCTGATCCACGCCCCCAAGG
GTTCCTCCCACTCCTACGCTATCCAGGAGAAGGATGAGCTCGAGCGTGTT
GCCCAGAGCCACCGGTAAAGGGGTTGTGTTGGATTTGTTCTCCGTATGGT
CCTCTGTTTGCGTATACTGGAGTGGACGGGGGTTTAACCGGGATTCAGTG
GATCCGCATGCATCTGCAAGGCT
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