CK938954

Overview
NameCK938954
Unique NameCK938954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938954 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 64/232 (27.59%), Postives = 113/232 (48.71%), Query Frame = 2
Query:   23 LQESKFLASCGYESNSKWGEKVGFMYHSLVEDYFTXFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPHLCVLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGS----IKIWRNEQRIWMIRAVTCQLYGSLNAIMHKLGLAEASFSATNKV----ADDEQVKLYGM 694
            + E + + S  ++  + WG+ VG++Y    ED  T F+ +H +GWRS+Y   E   F GT+  NL + L Q  RWS G +++  S   PLI G  R+  L+ ++Y ++ ++P+ + L +  +A  P   V+  IP    +    +   V++ +  L  H+   L    +    +  WRNEQ  +MI + +      L+ +++ L      F  T+K      +D+   LY M
Sbjct:  542 VNELEMVVSASFDKETDWGKGVGYIYDIATEDIVTGFR-IHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLI-GGRRLQPLQRVSYLNMTIYPVTS-LFILLYAISP---VMWLIPDEVYIQRPFTRYVVYLLMIILMIHMIGWLEIKWAGITWLDYWRNEQ-FFMIGSTSAYPTAVLHMVVNLLTKKGIHFRVTSKQTTADTNDKFADLYEM 766          
BLAST of CK938954 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 64/232 (27.59%), Postives = 113/232 (48.71%), Query Frame = 2
Query:   23 LQESKFLASCGYESNSKWGEKVGFMYHSLVEDYFTXFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPHLCVLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGS----IKIWRNEQRIWMIRAVTCQLYGSLNAIMHKLGLAEASFSATNKV----ADDEQVKLYGM 694
            + E + + S  ++  + WG+ VG++Y    ED  T F+ +H +GWRS+Y   E   F GT+  NL + L Q  RWS G +++  S   PLI G  R+  L+ ++Y ++ ++P+ + L +  +A  P   V+  IP    +    +   V++ +  L  H+   L    +    +  WRNEQ  +MI + +      L+ +++ L      F  T+K      +D+   LY M
Sbjct:  542 VNELEMVVSASFDKETDWGKGVGYIYDIATEDIVTGFR-IHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLI-GGRRLQPLQRVSYLNMTIYPVTS-LFILLYAISP---VMWLIPDEVYIQRPFTRYVVYLLVIILMIHMIGWLEIKWAGITWLDYWRNEQ-FFMIGSTSAYPTAVLHMVVNLLTKKGIHFRVTSKQTTADTNDKFADLYEM 766          
BLAST of CK938954 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.306e-14
Identity = 59/218 (27.06%), Postives = 102/218 (46.79%), Query Frame = 2
Query:   41 LASCGYESNSKWGEKVGFMYHSLVEDYFTXFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPHLCVLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAV----TCQLYGSL-----NAIMHKLGLAEASFSATNKVAD 667
            L +C YE  + WG  VG++Y+   ED  T F+ +H +GWRSVY + E   F GT+  NL + L Q  RWS G +++  S    L+ G  R+  L+ +AY ++  +P++    ++ +   P + ++                 V V        ++EV   G ++  W   ++ +MI +     T  LY +L       I  +L   + + S+ +K AD
Sbjct:  554 LTACAYEDGTSWGRDVGWVYNIATEDVVTGFR-MHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG-RRLHPLQRVAYLNMSTYPIVTVF-IFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTTASSGDKFAD 768          
BLAST of CK938954 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.306e-14
Identity = 59/218 (27.06%), Postives = 102/218 (46.79%), Query Frame = 2
Query:   41 LASCGYESNSKWGEKVGFMYHSLVEDYFTXFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPHLCVLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAV----TCQLYGSL-----NAIMHKLGLAEASFSATNKVAD 667
            L +C YE  + WG  VG++Y+   ED  T F+ +H +GWRSVY + E   F GT+  NL + L Q  RWS G +++  S    L+ G  R+  L+ +AY ++  +P++    ++ +   P + ++                 V V        ++EV   G ++  W   ++ +MI +     T  LY +L       I  +L   + + S+ +K AD
Sbjct:  524 LTACAYEDGTSWGRDVGWVYNIATEDVVTGFR-MHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG-RRLHPLQRVAYLNMSTYPIVTVF-IFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTAASSGDKFAD 738          
BLAST of CK938954 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.467e-14
Identity = 56/218 (25.69%), Postives = 103/218 (47.25%), Query Frame = 2
Query:   41 LASCGYESNSKWGEKVGFMYHSLVEDYFTXFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPHLCVLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAV----TCQLYGSL-----NAIMHKLGLAEASFSATNKVAD 667
            + +CGY+  + WG   G++Y    ED  T F+ +H +GWRSVY + E   F GT+  NL + L Q  RWS G +++  S    L+ G  R+  L+ +AY ++  +P++    ++ +   P + ++       +         V +        ++EV  +G ++  W   ++ +MI +     T  LY +L       I  +L   + + S+ +K AD
Sbjct:  563 VTACGYDLGTSWGRDAGWVYDIATEDVATGFR-MHQQGWRSVYTSMEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG-RRLHPLQRIAYLNMSTYPIVTVF-IFFYNLFPVMWLISEQYYIQQPFGEYLLYLVAIIAMIHVIGMFEVKWSGITVLDWCRNEQFYMIGSTGVYPTAVLYMALKLFTGKGIHFRLTSKQTTASSGDKFAD 777          
The following BLAST results are available for this feature:
BLAST of CK938954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLF3_ORYSI2.632e-1527.59Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSJ3.437e-1527.59Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF2_ORYSJ1.306e-1427.06Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLF1_ORYSJ1.306e-1427.06Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLF4_ORYSJ8.467e-1425.69Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_B05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938954 ID=CK938954; Name=CK938954; organism=Citrus sinensis; type=EST; length=720bp
TAATGATTCATCAAGCACTTTGCTACAAGAGAGCAAATTTTTGGCCTCAT
GTGGCTATGAAAGTAACTCAAAATGGGGTGAAAAGGTTGGTTTTATGTAT
CATTCTCTTGTTGAAGATTACTTCACGNGATTTAAACAACTACACTGCAA
AGGATGGAGATCGGTGTATCTTAACCCGGAAAGGCCGCAATTTTTGGGCA
CTTCTACAACAAACTTAAATGACTCGTTGGTTCAAGGCACGAGATGGAGT
TCGGGATTGGTTCAAGTAGCAATCTCAAAGTATTGCCCTCTGATATATGG
ACCACCGAGGATGTCTTTGCTTGAAAGCATGGCCTATGCTGACCTTGGAA
TGTTCCCTCTTCTTAATTGCTTGCCTCTGTGGTGCTTTGCCACTGTCCCT
CATCTCTGCGTATTGCATGGCATCCCATTGTACCCTGAGGTTTTAAGTTC
ATCTTCCCCCATATTCGTATTCGTTTTCCTATCGGCGCTTTCTAAACATC
TATACGAGGTTCTTTCAACTGGTGGATCAATCAAGATATGGAGAAATGAA
CAGAGAATATGGATGATAAGGGCAGTCACATGCCAACTTTATGGAAGCTT
AAATGCCATTATGCACAAGCTTGGCTTAGCTGAAGCCAGTTTCTCGGCCA
CAAATAAAGTCGCGGATGATGAACAAGTGAAGCTCTACGGAATGGGCAAG
TTCGATTTCCGAACATCAAA
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