CK938954
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK938954 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15 Identity = 64/232 (27.59%), Postives = 113/232 (48.71%), Query Frame = 2 Query: 23 LQESKFLASCGYESNSKWGEKVGFMYHSLVEDYFTXFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPHLCVLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGS----IKIWRNEQRIWMIRAVTCQLYGSLNAIMHKLGLAEASFSATNKV----ADDEQVKLYGM 694 + E + + S ++ + WG+ VG++Y ED T F+ +H +GWRS+Y E F GT+ NL + L Q RWS G +++ S PLI G R+ L+ ++Y ++ ++P+ + L + +A P V+ IP + + V++ + L H+ L + + WRNEQ +MI + + L+ +++ L F T+K +D+ LY M Sbjct: 542 VNELEMVVSASFDKETDWGKGVGYIYDIATEDIVTGFR-IHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLI-GGRRLQPLQRVSYLNMTIYPVTS-LFILLYAISP---VMWLIPDEVYIQRPFTRYVVYLLMIILMIHMIGWLEIKWAGITWLDYWRNEQ-FFMIGSTSAYPTAVLHMVVNLLTKKGIHFRVTSKQTTADTNDKFADLYEM 766
BLAST of CK938954 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15 Identity = 64/232 (27.59%), Postives = 113/232 (48.71%), Query Frame = 2 Query: 23 LQESKFLASCGYESNSKWGEKVGFMYHSLVEDYFTXFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPHLCVLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGS----IKIWRNEQRIWMIRAVTCQLYGSLNAIMHKLGLAEASFSATNKV----ADDEQVKLYGM 694 + E + + S ++ + WG+ VG++Y ED T F+ +H +GWRS+Y E F GT+ NL + L Q RWS G +++ S PLI G R+ L+ ++Y ++ ++P+ + L + +A P V+ IP + + V++ + L H+ L + + WRNEQ +MI + + L+ +++ L F T+K +D+ LY M Sbjct: 542 VNELEMVVSASFDKETDWGKGVGYIYDIATEDIVTGFR-IHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLI-GGRRLQPLQRVSYLNMTIYPVTS-LFILLYAISP---VMWLIPDEVYIQRPFTRYVVYLLVIILMIHMIGWLEIKWAGITWLDYWRNEQ-FFMIGSTSAYPTAVLHMVVNLLTKKGIHFRVTSKQTTADTNDKFADLYEM 766
BLAST of CK938954 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.306e-14 Identity = 59/218 (27.06%), Postives = 102/218 (46.79%), Query Frame = 2 Query: 41 LASCGYESNSKWGEKVGFMYHSLVEDYFTXFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPHLCVLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAV----TCQLYGSL-----NAIMHKLGLAEASFSATNKVAD 667 L +C YE + WG VG++Y+ ED T F+ +H +GWRSVY + E F GT+ NL + L Q RWS G +++ S L+ G R+ L+ +AY ++ +P++ ++ + P + ++ V V ++EV G ++ W ++ +MI + T LY +L I +L + + S+ +K AD Sbjct: 554 LTACAYEDGTSWGRDVGWVYNIATEDVVTGFR-MHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG-RRLHPLQRVAYLNMSTYPIVTVF-IFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTTASSGDKFAD 768
BLAST of CK938954 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.306e-14 Identity = 59/218 (27.06%), Postives = 102/218 (46.79%), Query Frame = 2 Query: 41 LASCGYESNSKWGEKVGFMYHSLVEDYFTXFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPHLCVLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAV----TCQLYGSL-----NAIMHKLGLAEASFSATNKVAD 667 L +C YE + WG VG++Y+ ED T F+ +H +GWRSVY + E F GT+ NL + L Q RWS G +++ S L+ G R+ L+ +AY ++ +P++ ++ + P + ++ V V ++EV G ++ W ++ +MI + T LY +L I +L + + S+ +K AD Sbjct: 524 LTACAYEDGTSWGRDVGWVYNIATEDVVTGFR-MHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG-RRLHPLQRVAYLNMSTYPIVTVF-IFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTAASSGDKFAD 738
BLAST of CK938954 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.467e-14 Identity = 56/218 (25.69%), Postives = 103/218 (47.25%), Query Frame = 2 Query: 41 LASCGYESNSKWGEKVGFMYHSLVEDYFTXFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPHLCVLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAV----TCQLYGSL-----NAIMHKLGLAEASFSATNKVAD 667 + +CGY+ + WG G++Y ED T F+ +H +GWRSVY + E F GT+ NL + L Q RWS G +++ S L+ G R+ L+ +AY ++ +P++ ++ + P + ++ + V + ++EV +G ++ W ++ +MI + T LY +L I +L + + S+ +K AD Sbjct: 563 VTACGYDLGTSWGRDAGWVYDIATEDVATGFR-MHQQGWRSVYTSMEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG-RRLHPLQRIAYLNMSTYPIVTVF-IFFYNLFPVMWLISEQYYIQQPFGEYLLYLVAIIAMIHVIGMFEVKWSGITVLDWCRNEQFYMIGSTGVYPTAVLYMALKLFTGKGIHFRLTSKQTTASSGDKFAD 777 The following BLAST results are available for this feature:
BLAST of CK938954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CK938954 ID=CK938954; Name=CK938954; organism=Citrus sinensis; type=EST; length=720bpback to top |