CK938950

Overview
NameCK938950
Unique NameCK938950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 208
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S+
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 60
[Close]
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 208
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S+
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 60
[Close]
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 208
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S+
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 60
[Close]
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.742e-11
Identity = 31/53 (58.49%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 208
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ S+
Sbjct:    8 ISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
[Close]
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 2 
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 205
            +KRIEN   RQ TF KRR+GL KKA EL+VLCDA++ L++FS  GKLY F S
Sbjct:    8 IKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLS 59
[Close]
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.971e-11
Identity = 31/53 (58.49%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 208
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF++  +L+++ SS
Sbjct:    8 ISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYASS 60
The following BLAST results are available for this feature:
BLAST of CK938950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
MEF2A_HUMAN7.819e-1260.38Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_CHICK7.819e-1260.38Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2A_BOVIN7.819e-1260.38Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
MEF2B_HUMAN1.742e-1158.49Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MAD32_ORYSJ2.275e-1163.46MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MEF2B_MOUSE2.971e-1158.49Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_A12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938950 ID=CK938950; Name=CK938950; organism=Citrus sinensis; type=EST; length=489bp
GGGGGAAGAAGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGT
TGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGA
AGAAATGGCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGC
TGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTT
GCAGTAGTTCAAGGTATACGCATATGCACACAGATATGTTATCACCAAAA
CAACTAAACAGCTATAATTAAATGAAAATTATGAAACACAACACAAAAAG
CTCTCTCTTTCTCTCTCTCTCTCTCTTCTCACTTGGCTTAGCTAGGGGGG
GGGGGGGGGCTATGAGAAATTCTTTCTTTTGCTTGGTTTCTTGGTTTGAA
TTCCGACTTTGGATCTTGAAACCATAAGAAAGATTATTTTTTGCTGTTTT
TGATCCTCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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