CK938950

Overview
NameCK938950
Unique NameCK938950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.871e-19
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS------RYTHMHTDMLSPKQLNSYN 268
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL+IFS RG+LYE+ ++S      RY    +D ++P  +   N
Sbjct:   23 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEAN 101          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.871e-19
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS------RYTHMHTDMLSPKQLNSYN 268
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL+IFS RG+LYE+ ++S      RY    +D ++P  +   N
Sbjct:   23 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPSVTEAN 101          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 6.604e-19
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS----------RYTHMHTDMLSP 247
            L+RIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVAL++FS+ G+LY+F SSS          RY +   D  +P
Sbjct:    8 LQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAP 83          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRYTHMHTDMLSPKQLNSYN*MKIMKHNTK 298
            L+RIENKINRQVTF+KRRNGLLKKA+E+SVLCDA+VALI+FS +GKLYEF S S        +L   Q  S++   +++ NT+
Sbjct:    8 LRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSM----EGILERYQRYSFDERAVLEPNTE 86          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRYTHMHTDMLSPKQLNSYN*MKIMKHNTK 298
            L+RIENKINRQVTF+KRRNGLLKKA+E+SVLCDA+VALI+FS +GKLYEF S S        +L   Q  S++   +++ NT+
Sbjct:    8 LRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSM----EGILERYQRYSFDERAVLEPNTE 86          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL++FSNRG+LYE+ ++S
Sbjct:   24 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNS 77          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.126e-18
Identity = 44/55 (80.00%), Postives = 51/55 (92.73%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSR 214
            LKRIENKINRQVTF+KRRNGLLKKA+E+SVLCDAEVA I+FS +GKLYE+ + SR
Sbjct:    8 LKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSR 62          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.921e-18
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS------RYTHMHTDMLSPKQLNSYN 268
            +KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEV+LIIFS +GKLYEF SS+      RY     D +S K ++  N
Sbjct:    8 MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTKDRVSTKPVSEEN 86          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.921e-18
Identity = 48/79 (60.76%), Postives = 57/79 (72.15%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS------RYTHMHTDMLSPKQLNSYN 268
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ ++S      RY    TD  +   ++  N
Sbjct:   24 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEAN 102          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.921e-18
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            +KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF SSS
Sbjct:    8 MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSS 61          
The following BLAST results are available for this feature:
BLAST of CK938950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
AGL5_ARATH3.871e-1960.76Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AGL1_ARATH3.871e-1960.76Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
MAD34_ORYSJ6.604e-1963.16MADS-box transcription factor 34 OS=Oryza sativa s... [more]
MAD18_ORYSJ8.625e-1959.04MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI8.625e-1959.04MADS-box transcription factor 18 OS=Oryza sativa s... [more]
AG_SOLLC8.625e-1979.63Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
MAD15_ORYSJ1.126e-1880.00MADS-box transcription factor 15 OS=Oryza sativa s... [more]
SOC1_ARATH1.921e-1862.03MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
AG_PANGI1.921e-1860.76Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AGL14_ARATH1.921e-1885.19Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_A12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938950 ID=CK938950; Name=CK938950; organism=Citrus sinensis; type=EST; length=489bp
GGGGGAAGAAGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGT
TGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGA
AGAAATGGCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGC
TGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTT
GCAGTAGTTCAAGGTATACGCATATGCACACAGATATGTTATCACCAAAA
CAACTAAACAGCTATAATTAAATGAAAATTATGAAACACAACACAAAAAG
CTCTCTCTTTCTCTCTCTCTCTCTCTTCTCACTTGGCTTAGCTAGGGGGG
GGGGGGGGGCTATGAGAAATTCTTTCTTTTGCTTGGTTTCTTGGTTTGAA
TTCCGACTTTGGATCTTGAAACCATAAGAAAGATTATTTTTTGCTGTTTT
TGATCCTCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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