CK938950

Overview
NameCK938950
Unique NameCK938950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            +KRIEN  +RQVTF+KRR GLLKKA+ELSVLCDAEVA+I+FS  GKL+EF S+S
Sbjct:    8 IKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTS 61          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.392e-15
Identity = 36/54 (66.67%), Postives = 48/54 (88.89%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            +KRIEN  NRQVT++KRRNG++KKA E+SVLCDA V++IIF++ GK++EFCS S
Sbjct:    8 IKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPS 61          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.556e-15
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 205
            +KRIEN  NRQVTF+KRR GLLKKA EL+VLCDA V ++IFS+ GK++E+CS
Sbjct:    8 IKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCS 59          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.868e-15
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 205
            +KRIEN  NRQVTF+KRR GLLKKA EL+VLCDA V ++IFS+ GK++E+CS
Sbjct:    8 IKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCS 59          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.868e-15
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            +KRIEN  NRQVT++KRR G++KKA EL+VLCDA+VA+I+FS+ GK +EFCS S
Sbjct:    8 IKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPS 61          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            +KRI+N +NRQVTF+KRR GL+KKA EL++LCDA+V LI+FS  G+LY+F SSS
Sbjct:    8 IKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSS 61          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 36/54 (66.67%), Postives = 48/54 (88.89%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            +KRIEN  NRQVT++KRRNG+LKKA E+SVLCDA V++IIF++ GK++EF S+S
Sbjct:    8 IKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTS 61          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 36/54 (66.67%), Postives = 48/54 (88.89%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            +KRIEN  NRQVT++KRRNG+LKKA E+SVLCDA V++IIF++ GK++EF S+S
Sbjct:    8 IKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTS 61          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 208
            +KRIEN  +RQVTF+KRR+GLLKKA ELSVLCDAEVA+I+FS  GKL+E+ S+
Sbjct:    8 IKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSST 60          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.198e-14
Identity = 34/52 (65.38%), Postives = 46/52 (88.46%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 205
            +KRIEN  +RQVTF+KRR+GL+KK +ELSVLCDA++ LI+FS +GKL E+C+
Sbjct:    8 VKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCT 59          
The following BLAST results are available for this feature:
BLAST of CK938950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
AGL15_BRANA1.988e-1574.07Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
GLOB_ANTMA3.392e-1566.67Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
M17_MAIZE7.556e-1569.23MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
MAD29_ORYSJ9.868e-1569.23MADS-box transcription factor 29 OS=Oryza sativa s... [more]
MAD16_ORYSJ9.868e-1566.67MADS-box transcription factor 16 OS=Oryza sativa s... [more]
MAD25_ORYSJ1.683e-1466.67MADS-box transcription factor 25 OS=Oryza sativa s... [more]
GLOB_TOBAC1.683e-1466.67Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
FBP1_PETHY1.683e-1466.67Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
AGL15_ARATH1.683e-1471.70Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
DEF21_ANTMA2.198e-1465.38MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004436_A12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938950 ID=CK938950; Name=CK938950; organism=Citrus sinensis; type=EST; length=489bp
GGGGGAAGAAGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGT
TGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGA
AGAAATGGCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGC
TGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTT
GCAGTAGTTCAAGGTATACGCATATGCACACAGATATGTTATCACCAAAA
CAACTAAACAGCTATAATTAAATGAAAATTATGAAACACAACACAAAAAG
CTCTCTCTTTCTCTCTCTCTCTCTCTTCTCACTTGGCTTAGCTAGGGGGG
GGGGGGGGGCTATGAGAAATTCTTTCTTTTGCTTGGTTTCTTGGTTTGAA
TTCCGACTTTGGATCTTGAAACCATAAGAAAGATTATTTTTTGCTGTTTT
TGATCCTCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top