CK938950

Overview
NameCK938950
Unique NameCK938950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRYTHMHTDM 238
            +KRIEN+ NRQVT++KRRNGL KKA EL+VLCDA+V++I+ S+ GKL+EF S S  T    D+
Sbjct:    8 IKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDL 70          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS-------SRYTHMHTDML 241
            +KRIENK +RQVTF+KRRNGL++KA +LSVLCDA VAL++ S  GKLY F S         RY   H D L
Sbjct:    8 IKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHADDL 78          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            ++RI++  +RQVTF+KRR GL+KKA EL++LCDAEV LIIFS+ GKLY+F SSS
Sbjct:    8 IQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSS 61          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRYTHMHTDMLSPKQLNSYN*MKI 280
            +K+I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFS+ GKL+++ SSS        +L  + L+S N  K+
Sbjct:    8 IKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSM-----KQILERRDLHSKNLEKL 79          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRYTHMHTDM 238
            +KRIEN+ NRQVT++KRRNGL KKA+EL+VLCDA V++I+FS+  KL+E+ S +  T    D+
Sbjct:    8 IKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDL 70          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 34/54 (62.96%), Postives = 47/54 (87.04%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            ++RI+N  +RQVTF+KRRNG+ KKA EL++LCDAEV L+IFS+ G+LYE+ S+S
Sbjct:    8 IRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTS 61          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            +KRI+N  +RQVTF+KRR+GL KKA ELS+LCDAEV L++FS+  +LY+F SSS
Sbjct:    8 IKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSS 61          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 205
            LKRIEN ++RQVTF KRR GLLKKA ELSVLCDAE+ ++IFS +GKL+E  +
Sbjct:    8 LKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELAT 59          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            +KRIEN  NR VTF+KRRNGL+KKA E++VLCDA+VALIIF++ GK+ ++C  S
Sbjct:    8 IKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPS 61          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 205
            +KRIEN  NRQVTF+KRR G+LKKA E+ VLCDAEV ++IFS+ GKL ++C+
Sbjct:    8 IKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCT 59          
The following BLAST results are available for this feature:
BLAST of CK938950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
MADS1_PETHY3.750e-1460.32Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
FLC_ARATH3.750e-1457.75MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
AGL21_ARATH3.750e-1466.67Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
JOIN_SOLLC4.897e-1454.55MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
AP3_ARATH4.897e-1457.14Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MAD27_ORYSJ6.396e-1462.96MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MAD23_ORYSJ6.396e-1464.81MADS-box transcription factor 23 OS=Oryza sativa s... [more]
AGL12_ARATH6.396e-1469.23Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
PIST_ARATH1.425e-1364.81Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MADS4_ORYSJ1.425e-1365.38MADS-box transcription factor 4 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_A12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938950 ID=CK938950; Name=CK938950; organism=Citrus sinensis; type=EST; length=489bp
GGGGGAAGAAGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGT
TGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGA
AGAAATGGCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGC
TGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTT
GCAGTAGTTCAAGGTATACGCATATGCACACAGATATGTTATCACCAAAA
CAACTAAACAGCTATAATTAAATGAAAATTATGAAACACAACACAAAAAG
CTCTCTCTTTCTCTCTCTCTCTCTCTTCTCACTTGGCTTAGCTAGGGGGG
GGGGGGGGGCTATGAGAAATTCTTTCTTTTGCTTGGTTTCTTGGTTTGAA
TTCCGACTTTGGATCTTGAAACCATAAGAAAGATTATTTTTTGCTGTTTT
TGATCCTCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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