CK938950

Overview
NameCK938950
Unique NameCK938950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 208
            ++RIEN ++RQVTF KRR GLLKKA ELSVLCDA+V +IIFS++GKL+E  ++
Sbjct:    8 MRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATN 60          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 205
            LK+IEN  NRQVTF+KRR GLLKKA EL++LCDA++ +I+FS  GK+YE+ S
Sbjct:    8 LKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSS 59          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            +++I++  +RQVTF+KRR GL+KKA EL++LCDAEV LIIFSN  KLY+F SSS
Sbjct:    8 IQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSS 61          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 205
            +KRIE+   RQVTF+KRR G LKKA EL+VLCDA+V +++FS++GKL++FCS
Sbjct:    8 MKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCS 59          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            +KRIE+   RQVTF+KRR GL KKA ELSVLCDA+VALI+FS+ GKL  F SSS
Sbjct:    8 IKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSS 61          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.431e-13
Identity = 35/57 (61.40%), Postives = 48/57 (84.21%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRYT 220
            +KRIEN+ NRQVT++KRRNGL KKA+ELSVLCDA+V++I+ S+  KL+E+ S +  T
Sbjct:    8 IKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTAT 64          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.146e-13
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 205
            +K+IEN+  RQVTF+KRR GL+KK  ELS+LCDA + LI+FS  GKL EFCS
Sbjct:    8 IKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCS 59          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            ++RI+N   RQVTF+KRR GL KKA ELS+LCDAEV L++FS  GKL++F S+S
Sbjct:   27 IRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTS 80          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 32/53 (60.38%), Postives = 46/53 (86.79%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 208
            ++RIEN+++RQVTF+KRR GLLKKA+E++VLCD +VA I+FS +G L+ + SS
Sbjct:    8 VRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASS 60          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 208
            L+RIEN ++RQVTF KRR GLLKKA ELS+LC+A++ +IIFS  GKLY+  ++
Sbjct:    8 LRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATT 60          
The following BLAST results are available for this feature:
BLAST of CK938950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
MAD33_ORYSJ1.425e-1366.04MADS-box transcription factor 33 OS=Oryza sativa s... [more]
MAD31_ORYSJ1.425e-1365.38MADS-box transcription factor 31 OS=Oryza sativa s... [more]
AGL17_ARATH1.425e-1364.81Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
MAD30_ORYSJ1.861e-1363.46MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MAD22_ORYSJ1.861e-1370.37MADS-box transcription factor 22 OS=Oryza sativa s... [more]
DEFA_ANTMA2.431e-1361.40Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
TT16_ARATH4.146e-1365.38Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
MAD47_ORYSJ5.415e-1362.96MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD20_ORYSJ7.072e-1360.38MADS-box transcription factor 20 OS=Oryza sativa s... [more]
MAD26_ORYSJ9.236e-1362.26MADS-box transcription factor 26 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004436_A12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938950 ID=CK938950; Name=CK938950; organism=Citrus sinensis; type=EST; length=489bp
GGGGGAAGAAGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGT
TGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGA
AGAAATGGCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGC
TGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTT
GCAGTAGTTCAAGGTATACGCATATGCACACAGATATGTTATCACCAAAA
CAACTAAACAGCTATAATTAAATGAAAATTATGAAACACAACACAAAAAG
CTCTCTCTTTCTCTCTCTCTCTCTCTTCTCACTTGGCTTAGCTAGGGGGG
GGGGGGGGGCTATGAGAAATTCTTTCTTTTGCTTGGTTTCTTGGTTTGAA
TTCCGACTTTGGATCTTGAAACCATAAGAAAGATTATTTTTTGCTGTTTT
TGATCCTCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top