CK938950

Overview
NameCK938950
Unique NameCK938950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 208
            L+RIEN ++RQVTF KRR GLLKKA ELS+LC+A++ +IIFS  GKLY+  ++
Sbjct:    8 LRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATT 60          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            ++RIE+   RQVTF+KRR GL KKA EL+VLCDA+VAL++FS+ GKL +F SS+
Sbjct:    8 IRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSN 61          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.687e-12
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 208
            + RI ++ NRQVTF KR+ G++KKAYELSVLCD E+ALIIFS+  KLY++ S+
Sbjct:    8 ISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYAST 60          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 32/53 (60.38%), Postives = 45/53 (84.91%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 208
            ++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S+
Sbjct:    8 IQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST 60          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 32/53 (60.38%), Postives = 45/53 (84.91%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 208
            ++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S+
Sbjct:    8 IQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST 60          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 32/53 (60.38%), Postives = 45/53 (84.91%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 208
            ++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S+
Sbjct:    8 IQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST 60          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 32/53 (60.38%), Postives = 45/53 (84.91%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 208
            ++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S+
Sbjct:    8 IQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST 60          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS-------SRYTHMHTDMLSPKQL 256
            +KRIENK +RQVTF+KRRNGL++KA +LS+LC++ +A+++ S  GKLY+  S         RY   H D L    L
Sbjct:    8 IKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHADELEALDL 83          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 29/52 (55.77%), Postives = 43/52 (82.69%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 205
            +++I N+ NRQ TF KR+NGL+KKA ELS+LCD E+A+I+FS+  KL+++ S
Sbjct:   10 IEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSS 61          
BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 31/52 (59.62%), Postives = 45/52 (86.54%), Query Frame = 2
Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 205
            +++IENK NRQVTF+KRRNG++KKA EL+VLCDA+V+L++ S+  KL+ + S
Sbjct:    8 IRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLS 59          
The following BLAST results are available for this feature:
BLAST of CK938950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
MAD26_ORYSI9.236e-1362.26MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD55_ORYSJ1.575e-1262.96MADS-box transcription factor 55 OS=Oryza sativa s... [more]
MEF2_DROME2.687e-1262.26Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2D_XENLA3.510e-1260.38Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT3.510e-1260.38Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE3.510e-1260.38Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN3.510e-1260.38Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
AGL31_ARATH3.510e-1247.37Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
SRFC_DICDI5.987e-1255.77Serum factor response C OS=Dictyostelium discoideu... [more]
CMB2_DIACA5.987e-1259.62MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_A12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938950 ID=CK938950; Name=CK938950; organism=Citrus sinensis; type=EST; length=489bp
GGGGGAAGAAGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGT
TGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGA
AGAAATGGCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGC
TGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTT
GCAGTAGTTCAAGGTATACGCATATGCACACAGATATGTTATCACCAAAA
CAACTAAACAGCTATAATTAAATGAAAATTATGAAACACAACACAAAAAG
CTCTCTCTTTCTCTCTCTCTCTCTCTTCTCACTTGGCTTAGCTAGGGGGG
GGGGGGGGGCTATGAGAAATTCTTTCTTTTGCTTGGTTTCTTGGTTTGAA
TTCCGACTTTGGATCTTGAAACCATAAGAAAGATTATTTTTTGCTGTTTT
TGATCCTCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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