CK938935

Overview
NameCK938935
Unique NameCK938935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ESCF3 (Flavoprotein wrbA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECOUT (Flavoprotein wrbA OS=Escherichia coli (strain UTI89 / UPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECOSM (Flavoprotein wrbA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECOSE (Flavoprotein wrbA OS=Escherichia coli (strain SE11) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECOLU (Flavoprotein wrbA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECOLI (Flavoprotein wrbA OS=Escherichia coli (strain K12) GN=wrbA PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECOLC (Flavoprotein wrbA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECOL6 (Flavoprotein wrbA OS=Escherichia coli O6 GN=wrbA PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECOL5 (Flavoprotein wrbA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECOK1 (Flavoprotein wrbA OS=Escherichia coli O1:K1 / APEC GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
The following BLAST results are available for this feature:
BLAST of CK938935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
WRBA_ESCF31.772e-1652.75Flavoprotein wrbA OS=Escherichia fergusonii (strai... [more]
WRBA_ECOUT1.772e-1652.75Flavoprotein wrbA OS=Escherichia coli (strain UTI8... [more]
WRBA_ECOSM1.772e-1652.75Flavoprotein wrbA OS=Escherichia coli (strain SMS-... [more]
WRBA_ECOSE1.772e-1652.75Flavoprotein wrbA OS=Escherichia coli (strain SE11... [more]
WRBA_ECOLU1.772e-1652.75Flavoprotein wrbA OS=Escherichia coli O17:K52:H18 ... [more]
WRBA_ECOLI1.772e-1652.75Flavoprotein wrbA OS=Escherichia coli (strain K12)... [more]
WRBA_ECOLC1.772e-1652.75Flavoprotein wrbA OS=Escherichia coli (strain ATCC... [more]
WRBA_ECOL61.772e-1652.75Flavoprotein wrbA OS=Escherichia coli O6 GN=wrbA P... [more]
WRBA_ECOL51.772e-1652.75Flavoprotein wrbA OS=Escherichia coli O6:K15:H31 (... [more]
WRBA_ECOK11.772e-1652.75Flavoprotein wrbA OS=Escherichia coli O1:K1 / APEC... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_D05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938935 ID=CK938935; Name=CK938935; organism=Citrus sinensis; type=EST; length=705bp
GGGTGCTTAAGAGGAAAGGAAAATTCTTGGGTGTTCCGAATGCATTGCTC
TTTTTCCAGTTATTTCTTGCCGTGTGTATGCTTCAACCAATCATTATGAT
ATGCACACACACACGGCAAATTTGTGAATGGATAATGAAAAATGCTCTAG
GAGCGCCAAAGACCTTAGGAGGCCATTTGATGATGCAAAATTTTCCTTGA
CTTGATTGGAATACATAGGTACCTGAGACACTTTCCAGTGTGATTTTGCA
AAAGATGAAAGCTCCTCCTAAAACAAATGACGTGCCAGTGATCAGGCCCC
ACCTGCTGGAATCTTCTGGAGTACTGGTTTTCATGGGGGAGGCCAGGAGC
TTACTGCATTGACTGCCGTAACACAACTAGCACATCATGGTATGCTGTTT
GTTCCACTTGGTTACACCTTTGGCAGCGGCATGTTTGAGATGAATGAGGT
GAAGGGTGGCTCTTCTTATGGCGCTGGAACATTTGCAGCAGATGGTTCCC
GCCAACCCACAGATCTAGAACTCCAACAGGCCTTTCACCAGGGAAAGTAT
GTTGCTGAAATAGCAAAGAAGCTCAAACGTTGATCTTAAGAAATTCTTGT
ACATGATGTATCTGATAGTGTGAAGAAATACTCAACTGTAATTTATCAAG
GAAAACCTATGAAATAAAATCTTCTACTCAAAAAAAAAAAAAAAAAAAAA
AAAAA
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