CK938935

Overview
NameCK938935
Unique NameCK938935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ACIF2 (Flavoprotein wrbA OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=wrbA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F ST    GGQE T  +  T L H GML V + Y+  + +  M+E+ GG+ YGA T +  DGSRQP+  EL  A  QG++VAEI +KL
Sbjct:  111 VFVSTATQHGGQETTLTSFHTFLFHQGMLVVGVPYSC-TELMNMDEISGGTPYGASTMSKGDGSRQPSANELTIARFQGRHVAEITRKL 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA3_RHIME (Flavoprotein wrbA 3 OS=Rhizobium meliloti GN=wrbA3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGS---RQPTDLELQQAFHQGKYVAEIAKKLK 577
            +F STG   GGQE T L+    + H GM+ V L Y+F  G   M+E+ GGS YGA T A D +   R P+  EL  A  QG++VAE+A  ++
Sbjct:  110 VFTSTGSQHGGQESTILSTHVVMLHLGMVIVGLPYSF-KGQMRMDEITGGSPYGASTLAEDENHRDRSPSANELDGARFQGRHVAEVAAAMQ 200          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_GEOLS (Flavoprotein wrbA OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=wrbA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F ST    GGQE T  +  + L HHGM+ V + YT    +  M+E+ GGS YGA T A  DGSR+P++ EL  A  QG +VA+I  +L
Sbjct:  115 VFASTATQHGGQETTITSFHSTLLHHGMIIVGVPYT-EQRLLTMDEISGGSPYGATTLAGGDGSRRPSENELAIARFQGAHVAKITARL 202          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BRUO2 (Flavoprotein wrbA OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=wrbA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  320 STGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            ST    GG EL  ++   Q+ HHGM+ VPL Y +   M   + V+GG+ YG  T A  DGSRQP+  EL  A  QG+ VAEI  KL
Sbjct:  113 STATQHGGAELALISTQWQMQHHGMIIVPLSYAYREQMGN-DVVRGGAPYGMTTTADGDGSRQPSAQELDDARFQGRRVAEITAKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_MESSB (Flavoprotein wrbA OS=Mesorhizobium sp. (strain BNC1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 2
Query:  302 PAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLKR 580
            PA +  ST    GG E+   +    L HHGM+ VPL Y +  G    + V+GG+ YG  T +  DGSR P+  EL+ A  QGK +AEI  KL R
Sbjct:  107 PATVMVSTATQHGGAEIALASTQLALQHHGMIIVPLSYAY-QGQSGNDTVRGGAPYGMTTTSDTDGSRMPSAQELEGARFQGKRLAEITAKLVR 199          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_GLUDA (Flavoprotein wrbA OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=wrbA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 2
Query:  314 FWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            F ST    GGQE T  + +T L H GM+   L Y F  G   ++E+ GG+ YGA T AA DGSR  +D E   A   G++VA+IA KL
Sbjct:  111 FTSTATQHGGQETTLFSVITNLLHQGMVISGLPYNF-QGQMRLDEITGGAPYGATTIAAGDGSRAVSDNERDGARFLGQHVAQIAAKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_AZOVD (Flavoprotein wrbA OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=wrbA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            A +F STG  GGG E T  +    LAHHGM+ V L Y     + +++E +GGS YGA T A ADGSR+P++ EL  A  QG +VA +  +++
Sbjct:  109 ASVFTSTGT-GGGSETTITSFWHTLAHHGMVIVGLPYVLPE-LSDVSEPRGGSPYGAATIAGADGSRRPSEKELILASFQGAHVARLVVRMQ 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BRUME (Flavoprotein wrbA OS=Brucella melitensis GN=wrbA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  320 STGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            ST    GG EL  ++   Q+ HHGM+ VPL Y +   M   + V+GG+ YG  T A  DGSRQP+  EL  A  QG+ VAEI  KL
Sbjct:  113 STATQHGGAELALISTQWQMQHHGMIIVPLSYAYREQMGN-DVVRGGAPYGMTTTADGDGSRQPSAQELDGARFQGRRVAEITAKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BRUAB (Flavoprotein wrbA OS=Brucella abortus GN=wrbA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  320 STGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            ST    GG EL  ++   Q+ HHGM+ VPL Y +   M   + V+GG+ YG  T A  DGSRQP+  EL  A  QG+ VAEI  KL
Sbjct:  113 STATQHGGAELALISTQWQMQHHGMIIVPLSYAYREQMGN-DVVRGGAPYGMTTTADGDGSRQPSAQELDGARFQGRRVAEITAKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BRUA2 (Flavoprotein wrbA OS=Brucella abortus (strain 2308) GN=wrbA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  320 STGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            ST    GG EL  ++   Q+ HHGM+ VPL Y +   M   + V+GG+ YG  T A  DGSRQP+  EL  A  QG+ VAEI  KL
Sbjct:  113 STATQHGGAELALISTQWQMQHHGMIIVPLSYAYREQMGN-DVVRGGAPYGMTTTADGDGSRQPSAQELDGARFQGRRVAEITAKL 197          
The following BLAST results are available for this feature:
BLAST of CK938935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
WRBA_ACIF22.927e-1146.07Flavoprotein wrbA OS=Acidithiobacillus ferrooxidan... [more]
WRBA3_RHIME2.927e-1143.48Flavoprotein wrbA 3 OS=Rhizobium meliloti GN=wrbA3... [more]
WRBA_GEOLS3.823e-1144.94Flavoprotein wrbA OS=Geobacter lovleyi (strain ATC... [more]
WRBA_BRUO23.823e-1146.51Flavoprotein wrbA OS=Brucella ovis (strain ATCC 25... [more]
WRBA_MESSB4.993e-1142.55Flavoprotein wrbA OS=Mesorhizobium sp. (strain BNC... [more]
WRBA_GLUDA4.993e-1145.45Flavoprotein wrbA OS=Gluconacetobacter diazotrophi... [more]
WRBA_AZOVD4.993e-1144.57Flavoprotein wrbA OS=Azotobacter vinelandii (strai... [more]
WRBA_BRUME6.521e-1146.51Flavoprotein wrbA OS=Brucella melitensis GN=wrbA P... [more]
WRBA_BRUAB6.521e-1146.51Flavoprotein wrbA OS=Brucella abortus GN=wrbA PE=3... [more]
WRBA_BRUA26.521e-1146.51Flavoprotein wrbA OS=Brucella abortus (strain 2308... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_D05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938935 ID=CK938935; Name=CK938935; organism=Citrus sinensis; type=EST; length=705bp
GGGTGCTTAAGAGGAAAGGAAAATTCTTGGGTGTTCCGAATGCATTGCTC
TTTTTCCAGTTATTTCTTGCCGTGTGTATGCTTCAACCAATCATTATGAT
ATGCACACACACACGGCAAATTTGTGAATGGATAATGAAAAATGCTCTAG
GAGCGCCAAAGACCTTAGGAGGCCATTTGATGATGCAAAATTTTCCTTGA
CTTGATTGGAATACATAGGTACCTGAGACACTTTCCAGTGTGATTTTGCA
AAAGATGAAAGCTCCTCCTAAAACAAATGACGTGCCAGTGATCAGGCCCC
ACCTGCTGGAATCTTCTGGAGTACTGGTTTTCATGGGGGAGGCCAGGAGC
TTACTGCATTGACTGCCGTAACACAACTAGCACATCATGGTATGCTGTTT
GTTCCACTTGGTTACACCTTTGGCAGCGGCATGTTTGAGATGAATGAGGT
GAAGGGTGGCTCTTCTTATGGCGCTGGAACATTTGCAGCAGATGGTTCCC
GCCAACCCACAGATCTAGAACTCCAACAGGCCTTTCACCAGGGAAAGTAT
GTTGCTGAAATAGCAAAGAAGCTCAAACGTTGATCTTAAGAAATTCTTGT
ACATGATGTATCTGATAGTGTGAAGAAATACTCAACTGTAATTTATCAAG
GAAAACCTATGAAATAAAATCTTCTACTCAAAAAAAAAAAAAAAAAAAAA
AAAAA
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