CK938935

Overview
NameCK938935
Unique NameCK938935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECOHS (Flavoprotein wrbA OS=Escherichia coli O9:H4 (strain HS) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECODH (Flavoprotein wrbA OS=Escherichia coli (strain K12 / DH10B) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECOBW (Flavoprotein wrbA OS=Escherichia coli (strain K12 / BW2952) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECO8A (Flavoprotein wrbA OS=Escherichia coli O8 (strain IAI1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECO7I (Flavoprotein wrbA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECO5E (Flavoprotein wrbA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECO57 (Putative flavoprotein wrbA OS=Escherichia coli O157:H7 GN=wrbA PE=5 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECO55 (Flavoprotein wrbA OS=Escherichia coli (strain 55989 / EAEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECO45 (Flavoprotein wrbA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
[Close]
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECO27 (Flavoprotein wrbA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196
The following BLAST results are available for this feature:
BLAST of CK938935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
WRBA_ECOHS1.772e-1652.75Flavoprotein wrbA OS=Escherichia coli O9:H4 (strai... [more]
WRBA_ECODH1.772e-1652.75Flavoprotein wrbA OS=Escherichia coli (strain K12 ... [more]
WRBA_ECOBW1.772e-1652.75Flavoprotein wrbA OS=Escherichia coli (strain K12 ... [more]
WRBA_ECO8A1.772e-1652.75Flavoprotein wrbA OS=Escherichia coli O8 (strain I... [more]
WRBA_ECO7I1.772e-1652.75Flavoprotein wrbA OS=Escherichia coli O7:K1 (strai... [more]
WRBA_ECO5E1.772e-1652.75Flavoprotein wrbA OS=Escherichia coli O157:H7 (str... [more]
WRBA_ECO571.772e-1652.75Putative flavoprotein wrbA OS=Escherichia coli O15... [more]
WRBA_ECO551.772e-1652.75Flavoprotein wrbA OS=Escherichia coli (strain 5598... [more]
WRBA_ECO451.772e-1652.75Flavoprotein wrbA OS=Escherichia coli O45:K1 (stra... [more]
WRBA_ECO271.772e-1652.75Flavoprotein wrbA OS=Escherichia coli O127:H6 (str... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_D05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938935 ID=CK938935; Name=CK938935; organism=Citrus sinensis; type=EST; length=705bp
GGGTGCTTAAGAGGAAAGGAAAATTCTTGGGTGTTCCGAATGCATTGCTC
TTTTTCCAGTTATTTCTTGCCGTGTGTATGCTTCAACCAATCATTATGAT
ATGCACACACACACGGCAAATTTGTGAATGGATAATGAAAAATGCTCTAG
GAGCGCCAAAGACCTTAGGAGGCCATTTGATGATGCAAAATTTTCCTTGA
CTTGATTGGAATACATAGGTACCTGAGACACTTTCCAGTGTGATTTTGCA
AAAGATGAAAGCTCCTCCTAAAACAAATGACGTGCCAGTGATCAGGCCCC
ACCTGCTGGAATCTTCTGGAGTACTGGTTTTCATGGGGGAGGCCAGGAGC
TTACTGCATTGACTGCCGTAACACAACTAGCACATCATGGTATGCTGTTT
GTTCCACTTGGTTACACCTTTGGCAGCGGCATGTTTGAGATGAATGAGGT
GAAGGGTGGCTCTTCTTATGGCGCTGGAACATTTGCAGCAGATGGTTCCC
GCCAACCCACAGATCTAGAACTCCAACAGGCCTTTCACCAGGGAAAGTAT
GTTGCTGAAATAGCAAAGAAGCTCAAACGTTGATCTTAAGAAATTCTTGT
ACATGATGTATCTGATAGTGTGAAGAAATACTCAACTGTAATTTATCAAG
GAAAACCTATGAAATAAAATCTTCTACTCAAAAAAAAAAAAAAAAAAAAA
AAAAA
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