CK938935

Overview
NameCK938935
Unique NameCK938935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ECO24 (Flavoprotein wrbA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_CITK8 (Flavoprotein wrbA OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_TOLAT (Flavoprotein wrbA OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=wrbA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            A +F STG  GGGQE+T  +  T LAHHGM+ VP+GY     MF+++ V GG+ YGA T A  DGSRQP   EL  A  QGK+VA +A K+K
Sbjct:  109 ASVFASTGV-GGGQEMTITSTWTTLAHHGMVIVPIGYGTAE-MFDISHVGGGTPYGATTLAGGDGSRQPDARELAIARFQGKHVATVAAKMK 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SALTY (Flavoprotein wrbA OS=Salmonella typhimurium GN=wrbA PE=3 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  110 VFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SALSV (Flavoprotein wrbA OS=Salmonella schwarzengrund (strain CVM19633) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  110 VFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SALPK (Flavoprotein wrbA OS=Salmonella paratyphi A (strain AKU_12601) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  110 VFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SALPC (Flavoprotein wrbA OS=Salmonella paratyphi C (strain RKS4594) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  110 VFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SALPA (Flavoprotein wrbA OS=Salmonella paratyphi A GN=wrbA PE=3 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  110 VFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SALNS (Flavoprotein wrbA OS=Salmonella newport (strain SL254) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  110 VFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SALHS (Flavoprotein wrbA OS=Salmonella heidelberg (strain SL476) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  110 VFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
The following BLAST results are available for this feature:
BLAST of CK938935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
WRBA_ECO241.772e-1652.75Flavoprotein wrbA OS=Escherichia coli O139:H28 (st... [more]
WRBA_CITK81.772e-1652.75Flavoprotein wrbA OS=Citrobacter koseri (strain AT... [more]
WRBA_TOLAT3.022e-1653.26Flavoprotein wrbA OS=Tolumonas auensis (strain DSM... [more]
WRBA_SALTY5.155e-1652.81Flavoprotein wrbA OS=Salmonella typhimurium GN=wrb... [more]
WRBA_SALSV5.155e-1652.81Flavoprotein wrbA OS=Salmonella schwarzengrund (st... [more]
WRBA_SALPK5.155e-1652.81Flavoprotein wrbA OS=Salmonella paratyphi A (strai... [more]
WRBA_SALPC5.155e-1652.81Flavoprotein wrbA OS=Salmonella paratyphi C (strai... [more]
WRBA_SALPA5.155e-1652.81Flavoprotein wrbA OS=Salmonella paratyphi A GN=wrb... [more]
WRBA_SALNS5.155e-1652.81Flavoprotein wrbA OS=Salmonella newport (strain SL... [more]
WRBA_SALHS5.155e-1652.81Flavoprotein wrbA OS=Salmonella heidelberg (strain... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_D05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938935 ID=CK938935; Name=CK938935; organism=Citrus sinensis; type=EST; length=705bp
GGGTGCTTAAGAGGAAAGGAAAATTCTTGGGTGTTCCGAATGCATTGCTC
TTTTTCCAGTTATTTCTTGCCGTGTGTATGCTTCAACCAATCATTATGAT
ATGCACACACACACGGCAAATTTGTGAATGGATAATGAAAAATGCTCTAG
GAGCGCCAAAGACCTTAGGAGGCCATTTGATGATGCAAAATTTTCCTTGA
CTTGATTGGAATACATAGGTACCTGAGACACTTTCCAGTGTGATTTTGCA
AAAGATGAAAGCTCCTCCTAAAACAAATGACGTGCCAGTGATCAGGCCCC
ACCTGCTGGAATCTTCTGGAGTACTGGTTTTCATGGGGGAGGCCAGGAGC
TTACTGCATTGACTGCCGTAACACAACTAGCACATCATGGTATGCTGTTT
GTTCCACTTGGTTACACCTTTGGCAGCGGCATGTTTGAGATGAATGAGGT
GAAGGGTGGCTCTTCTTATGGCGCTGGAACATTTGCAGCAGATGGTTCCC
GCCAACCCACAGATCTAGAACTCCAACAGGCCTTTCACCAGGGAAAGTAT
GTTGCTGAAATAGCAAAGAAGCTCAAACGTTGATCTTAAGAAATTCTTGT
ACATGATGTATCTGATAGTGTGAAGAAATACTCAACTGTAATTTATCAAG
GAAAACCTATGAAATAAAATCTTCTACTCAAAAAAAAAAAAAAAAAAAAA
AAAAA
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