CK938935

Overview
NameCK938935
Unique NameCK938935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_PHOLL (Flavoprotein wrbA OS=Photorhabdus luminescens subsp. laumondii GN=wrbA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.793e-16
Identity = 46/92 (50.00%), Postives = 65/92 (70.65%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            A +F STG  GGGQE+T  +  T LAHHG + VP+GY     + ++++++GG+ YGA T A  DGSR P + EL+ A +QG++VA+IAKKLK
Sbjct:  109 ASVFTSTGV-GGGQEMTITSTWTTLAHHGFIIVPIGYGIPE-IGDISQMQGGTPYGASTIADGDGSRIPNENELKIARYQGEHVAKIAKKLK 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_GEOMG (Flavoprotein wrbA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=wrbA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.101e-16
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  308 GIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            G+F S+    GGQE T LT  T L H GM+ V L Y F +G   ++E+ GGS YGA T A   G R P++ EL  A +QGKY+AEIA KLK
Sbjct:  113 GVFTSSATQHGGQESTILTFHTFLLHQGMVLVGLPYAF-AGQMRIDEITGGSPYGASTIAGGQGERLPSENELAGARYQGKYIAEIAAKLK 202          

HSP 2 Score: 23.8682 bits (50), Expect = 9.101e-16
Identity = 16/41 (39.02%), Postives = 23/41 (56.10%), Query Frame = 3
Query:  219 VPETLSSVILQKMKA--PPKT-NDVPVIRPHLLESSGVLVF 332
            VPETL + +LQKM A  P K    +PV     L ++  ++F
Sbjct:   38 VPETLPTDVLQKMGAVEPQKAFAHIPVCTVDELAAADAIIF 78          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ENT38 (Flavoprotein wrbA OS=Enterobacter sp. (strain 638) GN=wrbA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F+++ V+GG+ YGA T A  DGSRQP+  EL  A  QG++VA +AKKL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYG-AQELFDVSAVRGGTPYGATTIAGGDGSRQPSQEELAIARFQGEHVAGLAKKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BURM1 (Flavoprotein wrbA OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=wrbA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG   GGQE T  +  T L HHGM+ V + Y   SG+  MNE+ GG+ YGA T A ADGSRQP+  EL  A +QGK+VAE+A KL
Sbjct:  111 VFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMNEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELAVKL 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: YCP4_YEAST (Flavoprotein-like protein YCP4 OS=Saccharomyces cerevisiae GN=YCP4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFG-SGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            AGIF ST  +GGGQE T    ++ LAHHG++F+PLGY    + +  + EV GGS +GAGT A  DGSR  + LEL+ A  QGK   E AKKL
Sbjct:  109 AGIFVSTSSYGGGQESTVKACLSYLAHHGIIFLPLGYKNSFAELASIEEVHGGSPWGAGTLAGPDGSRTASPLELRIAEIQGKTFYETAKKL 200          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BURS3 (Flavoprotein wrbA OS=Burkholderia sp. (strain 383) GN=wrbA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 48/89 (53.93%), Postives = 58/89 (65.17%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG   GGQE T  +  T L HHGM+ V + Y   SG+  MNE+ GG+ YGA T A ADGSRQP+  EL  A +QGK VAE+A KL
Sbjct:  111 VFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMNEITGGTPYGATTLAGADGSRQPSANELDIARYQGKRVAELASKL 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BURCH (Flavoprotein wrbA OS=Burkholderia cenocepacia (strain HI2424) GN=wrbA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.558e-15
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG   GGQE T  +  T L HHGM+ V + Y   SG+  M+E+ GG+ YGA T A ADGSRQP+  EL  A +QGK+VAE+A KL
Sbjct:  111 VFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMSEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELASKL 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BURCA (Flavoprotein wrbA OS=Burkholderia cenocepacia (strain AU 1054) GN=wrbA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.558e-15
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG   GGQE T  +  T L HHGM+ V + Y   SG+  M+E+ GG+ YGA T A ADGSRQP+  EL  A +QGK+VAE+A KL
Sbjct:  111 VFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMSEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELASKL 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BRASO (Flavoprotein wrbA OS=Bradyrhizobium sp. (strain ORS278) GN=wrbA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.341e-15
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  308 GIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTF-AADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            G F ST    GGQE T  T +T L H GM  V L Y F +G  +++EV GGS YGA T    DGSRQP++ EL  A +QG+ +AE AKKL
Sbjct:  109 GAFTSTATQHGGQETTLFTIITNLLHFGMTIVGLNYGF-AGQMKLDEVTGGSPYGATTITGGDGSRQPSENELAGARYQGRVIAETAKKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SERP5 (Flavoprotein wrbA OS=Serratia proteamaculans (strain 568) GN=wrbA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            +F STG  GGGQE T  +  T LAHHG + VP+GY     +F+++ V+GG+ YGA T A  DGSRQP+  EL  A +QG++VA+I  KLK
Sbjct:  111 VFSSTGT-GGGQEHTITSTWTTLAHHGFIIVPIGYATPE-LFDVSHVRGGTPYGATTIAGGDGSRQPSQEELTIARYQGEHVAKITAKLK 198          
The following BLAST results are available for this feature:
BLAST of CK938935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
WRBA_PHOLL8.793e-1650.00Flavoprotein wrbA OS=Photorhabdus luminescens subs... [more]
WRBA_GEOMG9.101e-1650.55Flavoprotein wrbA OS=Geobacter metallireducens (st... [more]
WRBA_ENT381.148e-1552.75Flavoprotein wrbA OS=Enterobacter sp. (strain 638)... [more]
WRBA_BURM11.148e-1553.93Flavoprotein wrbA OS=Burkholderia multivorans (str... [more]
YCP4_YEAST1.959e-1552.17Flavoprotein-like protein YCP4 OS=Saccharomyces ce... [more]
WRBA_BURS31.959e-1553.93Flavoprotein wrbA OS=Burkholderia sp. (strain 383)... [more]
WRBA_BURCH2.558e-1552.81Flavoprotein wrbA OS=Burkholderia cenocepacia (str... [more]
WRBA_BURCA2.558e-1552.81Flavoprotein wrbA OS=Burkholderia cenocepacia (str... [more]
WRBA_BRASO3.341e-1551.11Flavoprotein wrbA OS=Bradyrhizobium sp. (strain OR... [more]
WRBA_SERP54.364e-1551.11Flavoprotein wrbA OS=Serratia proteamaculans (stra... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_D05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938935 ID=CK938935; Name=CK938935; organism=Citrus sinensis; type=EST; length=705bp
GGGTGCTTAAGAGGAAAGGAAAATTCTTGGGTGTTCCGAATGCATTGCTC
TTTTTCCAGTTATTTCTTGCCGTGTGTATGCTTCAACCAATCATTATGAT
ATGCACACACACACGGCAAATTTGTGAATGGATAATGAAAAATGCTCTAG
GAGCGCCAAAGACCTTAGGAGGCCATTTGATGATGCAAAATTTTCCTTGA
CTTGATTGGAATACATAGGTACCTGAGACACTTTCCAGTGTGATTTTGCA
AAAGATGAAAGCTCCTCCTAAAACAAATGACGTGCCAGTGATCAGGCCCC
ACCTGCTGGAATCTTCTGGAGTACTGGTTTTCATGGGGGAGGCCAGGAGC
TTACTGCATTGACTGCCGTAACACAACTAGCACATCATGGTATGCTGTTT
GTTCCACTTGGTTACACCTTTGGCAGCGGCATGTTTGAGATGAATGAGGT
GAAGGGTGGCTCTTCTTATGGCGCTGGAACATTTGCAGCAGATGGTTCCC
GCCAACCCACAGATCTAGAACTCCAACAGGCCTTTCACCAGGGAAAGTAT
GTTGCTGAAATAGCAAAGAAGCTCAAACGTTGATCTTAAGAAATTCTTGT
ACATGATGTATCTGATAGTGTGAAGAAATACTCAACTGTAATTTATCAAG
GAAAACCTATGAAATAAAATCTTCTACTCAAAAAAAAAAAAAAAAAAAAA
AAAAA
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