CK938935

Overview
NameCK938935
Unique NameCK938935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_METSB (Flavoprotein wrbA OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=wrbA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 2
Query:  314 FWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            F ST    GGQE+T  + +T L H G++ V L Y F +G   ++E+ GGS YGA T AA DGSRQP++ EL  A +QG+ VAE+A KLK
Sbjct:  111 FTSTATQHGGQEVTLFSIITNLLHFGLVIVGLDYGF-AGQGRLDEITGGSPYGATTIAASDGSRQPSETELAGARYQGRRVAEVAGKLK 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BURVG (Flavoprotein wrbA OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=wrbA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG   GGQE T  +  T L HHGM+ V + Y   SG+ +M E+ GG+ YGA T A ADGSRQP+  EL  A +QGK+VA++A KL
Sbjct:  111 VFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVDMKEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAQLAAKL 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_YERPY (Flavoprotein wrbA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=wrbA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            A +F STG  GGGQE T  +  T LAHHG + VP+GY     +F++++ +GG+ YGA T A  DGSRQP+  EL  A  QG++VA+I  KLK
Sbjct:  109 ASVFASTGT-GGGQEHTITSTWTTLAHHGFIIVPIGYG-AKELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKLK 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_YERPS (Flavoprotein wrbA OS=Yersinia pseudotuberculosis GN=wrbA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            A +F STG  GGGQE T  +  T LAHHG + VP+GY     +F++++ +GG+ YGA T A  DGSRQP+  EL  A  QG++VA+I  KLK
Sbjct:  109 ASVFASTGT-GGGQEHTITSTWTTLAHHGFIIVPIGYG-AKELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKLK 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_YERPP (Flavoprotein wrbA OS=Yersinia pestis (strain Pestoides F) GN=wrbA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            A +F STG  GGGQE T  +  T LAHHG + VP+GY     +F++++ +GG+ YGA T A  DGSRQP+  EL  A  QG++VA+I  KLK
Sbjct:  109 ASVFASTGT-GGGQEHTITSTWTTLAHHGFIIVPIGYG-AKELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKLK 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_YERPN (Flavoprotein wrbA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=wrbA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            A +F STG  GGGQE T  +  T LAHHG + VP+GY     +F++++ +GG+ YGA T A  DGSRQP+  EL  A  QG++VA+I  KLK
Sbjct:  109 ASVFASTGT-GGGQEHTITSTWTTLAHHGFIIVPIGYG-AKELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKLK 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_YERPG (Flavoprotein wrbA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=wrbA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            A +F STG  GGGQE T  +  T LAHHG + VP+GY     +F++++ +GG+ YGA T A  DGSRQP+  EL  A  QG++VA+I  KLK
Sbjct:  109 ASVFASTGT-GGGQEHTITSTWTTLAHHGFIIVPIGYG-AKELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKLK 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_YERPE (Flavoprotein wrbA OS=Yersinia pestis GN=wrbA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            A +F STG  GGGQE T  +  T LAHHG + VP+GY     +F++++ +GG+ YGA T A  DGSRQP+  EL  A  QG++VA+I  KLK
Sbjct:  109 ASVFASTGT-GGGQEHTITSTWTTLAHHGFIIVPIGYG-AKELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKLK 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_YERPB (Flavoprotein wrbA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=wrbA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            A +F STG  GGGQE T  +  T LAHHG + VP+GY     +F++++ +GG+ YGA T A  DGSRQP+  EL  A  QG++VA+I  KLK
Sbjct:  109 ASVFASTGT-GGGQEHTITSTWTTLAHHGFIIVPIGYG-AKELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKLK 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_YERPA (Flavoprotein wrbA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=wrbA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            A +F STG  GGGQE T  +  T LAHHG + VP+GY     +F++++ +GG+ YGA T A  DGSRQP+  EL  A  QG++VA+I  KLK
Sbjct:  109 ASVFASTGT-GGGQEHTITSTWTTLAHHGFIIVPIGYG-AKELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKLK 198          
The following BLAST results are available for this feature:
BLAST of CK938935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
WRBA_METSB5.699e-1550.56Flavoprotein wrbA OS=Methylocella silvestris (stra... [more]
WRBA_BURVG5.699e-1551.69Flavoprotein wrbA OS=Burkholderia vietnamiensis (s... [more]
WRBA_YERPY9.722e-1550.00Flavoprotein wrbA OS=Yersinia pseudotuberculosis s... [more]
WRBA_YERPS9.722e-1550.00Flavoprotein wrbA OS=Yersinia pseudotuberculosis G... [more]
WRBA_YERPP9.722e-1550.00Flavoprotein wrbA OS=Yersinia pestis (strain Pesto... [more]
WRBA_YERPN9.722e-1550.00Flavoprotein wrbA OS=Yersinia pestis bv. Antiqua (... [more]
WRBA_YERPG9.722e-1550.00Flavoprotein wrbA OS=Yersinia pestis bv. Antiqua (... [more]
WRBA_YERPE9.722e-1550.00Flavoprotein wrbA OS=Yersinia pestis GN=wrbA PE=3 ... [more]
WRBA_YERPB9.722e-1550.00Flavoprotein wrbA OS=Yersinia pseudotuberculosis s... [more]
WRBA_YERPA9.722e-1550.00Flavoprotein wrbA OS=Yersinia pestis bv. Antiqua (... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_D05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938935 ID=CK938935; Name=CK938935; organism=Citrus sinensis; type=EST; length=705bp
GGGTGCTTAAGAGGAAAGGAAAATTCTTGGGTGTTCCGAATGCATTGCTC
TTTTTCCAGTTATTTCTTGCCGTGTGTATGCTTCAACCAATCATTATGAT
ATGCACACACACACGGCAAATTTGTGAATGGATAATGAAAAATGCTCTAG
GAGCGCCAAAGACCTTAGGAGGCCATTTGATGATGCAAAATTTTCCTTGA
CTTGATTGGAATACATAGGTACCTGAGACACTTTCCAGTGTGATTTTGCA
AAAGATGAAAGCTCCTCCTAAAACAAATGACGTGCCAGTGATCAGGCCCC
ACCTGCTGGAATCTTCTGGAGTACTGGTTTTCATGGGGGAGGCCAGGAGC
TTACTGCATTGACTGCCGTAACACAACTAGCACATCATGGTATGCTGTTT
GTTCCACTTGGTTACACCTTTGGCAGCGGCATGTTTGAGATGAATGAGGT
GAAGGGTGGCTCTTCTTATGGCGCTGGAACATTTGCAGCAGATGGTTCCC
GCCAACCCACAGATCTAGAACTCCAACAGGCCTTTCACCAGGGAAAGTAT
GTTGCTGAAATAGCAAAGAAGCTCAAACGTTGATCTTAAGAAATTCTTGT
ACATGATGTATCTGATAGTGTGAAGAAATACTCAACTGTAATTTATCAAG
GAAAACCTATGAAATAAAATCTTCTACTCAAAAAAAAAAAAAAAAAAAAA
AAAAA
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