CK938935

Overview
NameCK938935
Unique NameCK938935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_YERP3 (Flavoprotein wrbA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=wrbA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            A +F STG  GGGQE T  +  T LAHHG + VP+GY     +F++++ +GG+ YGA T A  DGSRQP+  EL  A  QG++VA+I  KLK
Sbjct:  109 ASVFASTGT-GGGQEHTITSTWTTLAHHGFIIVPIGYG-AKELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKLK 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_YERE8 (Flavoprotein wrbA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=wrbA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLKR 580
            A +F STG  GGGQE T  +  T LAHHG + VP+GY   + +F++++ +GG+ YGA T A  DGSRQP+  EL  A  QG++VA+I  KL R
Sbjct:  109 ASVFASTGT-GGGQEHTITSTWTTLAHHGFIIVPIGYG-ATELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKLAR 199          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_AGRRK (Flavoprotein wrbA OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=wrbA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F S+    GGQE T L  +  L HHGM  V L Y F +G     EVKGGS YGA T    DGSRQP+++EL+ A +QG +VA+IA KL
Sbjct:  110 VFTSSATQHGGQESTILGFIPTLLHHGMAVVGLPYAF-AGQMGTEEVKGGSPYGASTITNGDGSRQPSEIELEAAKYQGAHVAKIAAKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_GEOSL (Flavoprotein wrbA OS=Geobacter sulfurreducens GN=wrbA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.626e-14
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            AG+F S+    GGQE T LT  T L H GM+ V L Y F +G   ++E+ GGS YGA T A   G R P++ +L  A  QG+YVA+IA KL
Sbjct:  112 AGVFTSSATQHGGQESTILTFHTFLLHQGMVIVGLPYAF-AGQTRIDEITGGSPYGASTIAGGQGERLPSENDLAGARFQGRYVAQIAAKL 201          

HSP 2 Score: 25.0238 bits (53), Expect = 1.626e-14
Identity = 17/41 (41.46%), Postives = 23/41 (56.10%), Query Frame = 3
Query:  219 VPETLSSVILQKMKA--PPKT-NDVPVIRPHLLESSGVLVF 332
            VPETLS  +L+KM A  P K    +PV     L S+  ++F
Sbjct:   38 VPETLSPDVLEKMGAVEPQKAFAHIPVATVDELASADAIIF 78          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BRASB (Flavoprotein wrbA OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=wrbA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  308 GIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTF-AADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            G F ST    GGQE T  T +T L H GM  V L Y F +G  +++EV GGS YGA T    DGSR P++ EL  A +QG+ +AE AKKL
Sbjct:  109 GAFTSTATQHGGQETTLFTIITNLLHFGMTIVGLNYGF-AGQMKLDEVTGGSPYGATTITGGDGSRLPSENELAGARYQGRVIAETAKKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_HALHL (Flavoprotein wrbA OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGG E T  +    LAHHGM+ V L Y     + +++ VKGGS YGAGT A  DGSRQP + EL  A +QG++VAEIA++L
Sbjct:  110 VFTSTGT-GGGNETTITSFWHTLAHHGMVIVGLSYA-APELADLSVVKGGSPYGAGTIAGGDGSRQPNEQELALARYQGRHVAEIAQRL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BURCM (Flavoprotein wrbA OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=wrbA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 46/89 (51.69%), Postives = 58/89 (65.17%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG   GGQE T  +  T L H GM+ V + Y   SG+  M+E+ GG+ YGA T A ADGSRQP+  EL  A +QGK+VAE+A KL
Sbjct:  111 VFASTGTQHGGQETTITSFHTTLLHQGMVIVGVPYAC-SGLVNMSEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELAVKL 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BURA4 (Flavoprotein wrbA OS=Burkholderia ambifaria (strain MC40-6) GN=wrbA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 46/89 (51.69%), Postives = 58/89 (65.17%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG   GGQE T  +  T L H GM+ V + Y   SG+  M+E+ GG+ YGA T A ADGSRQP+  EL  A +QGK+VAE+A KL
Sbjct:  111 VFASTGTQHGGQETTITSFHTTLLHQGMVIVGVPYAC-SGLVNMSEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELAVKL 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: PST2_YEAST (Protoplast secreted protein 2 OS=Saccharomyces cerevisiae GN=PST2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY-TFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKK 571
            AG F STG  GGG E T + +++ LAHHG++FVPLGY    + +  M+EV GGS +GAGT A +DGSR P+ LELQ    QGK   E   K
Sbjct:  108 AGCFVSTGT-GGGNEATIMNSLSTLAHHGIIFVPLGYKNVFAELTNMDEVHGGSPWGAGTIAGSDGSRSPSALELQVHEIQGKTFYETVAK 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_XANP2 (Flavoprotein wrbA OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=wrbA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  308 GIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTF-AADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            G F ST    GGQE+T  + +T L H GM+ V L Y +G+ M  ++EV GGS YGA T    DGSRQP+ +EL  A +QG+ +AE A KL
Sbjct:  109 GAFTSTATQHGGQEVTLFSIITNLMHFGMVIVGLDYGYGAQM-TLDEVTGGSPYGATTITGGDGSRQPSAIELDGARYQGRKIAETAIKL 197          
The following BLAST results are available for this feature:
BLAST of CK938935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
WRBA_YERP39.722e-1550.00Flavoprotein wrbA OS=Yersinia pseudotuberculosis s... [more]
WRBA_YERE89.722e-1549.46Flavoprotein wrbA OS=Yersinia enterocolitica serot... [more]
WRBA_AGRRK9.722e-1550.56Flavoprotein wrbA OS=Agrobacterium radiobacter (st... [more]
WRBA_GEOSL1.626e-1448.35Flavoprotein wrbA OS=Geobacter sulfurreducens GN=w... [more]
WRBA_BRASB2.166e-1450.00Flavoprotein wrbA OS=Bradyrhizobium sp. (strain BT... [more]
WRBA_HALHL3.694e-1451.69Flavoprotein wrbA OS=Halorhodospira halophila (str... [more]
WRBA_BURCM3.694e-1451.69Flavoprotein wrbA OS=Burkholderia ambifaria (strai... [more]
WRBA_BURA43.694e-1451.69Flavoprotein wrbA OS=Burkholderia ambifaria (strai... [more]
PST2_YEAST3.694e-1451.65Protoplast secreted protein 2 OS=Saccharomyces cer... [more]
WRBA_XANP24.825e-1448.89Flavoprotein wrbA OS=Xanthobacter autotrophicus (s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_D05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938935 ID=CK938935; Name=CK938935; organism=Citrus sinensis; type=EST; length=705bp
GGGTGCTTAAGAGGAAAGGAAAATTCTTGGGTGTTCCGAATGCATTGCTC
TTTTTCCAGTTATTTCTTGCCGTGTGTATGCTTCAACCAATCATTATGAT
ATGCACACACACACGGCAAATTTGTGAATGGATAATGAAAAATGCTCTAG
GAGCGCCAAAGACCTTAGGAGGCCATTTGATGATGCAAAATTTTCCTTGA
CTTGATTGGAATACATAGGTACCTGAGACACTTTCCAGTGTGATTTTGCA
AAAGATGAAAGCTCCTCCTAAAACAAATGACGTGCCAGTGATCAGGCCCC
ACCTGCTGGAATCTTCTGGAGTACTGGTTTTCATGGGGGAGGCCAGGAGC
TTACTGCATTGACTGCCGTAACACAACTAGCACATCATGGTATGCTGTTT
GTTCCACTTGGTTACACCTTTGGCAGCGGCATGTTTGAGATGAATGAGGT
GAAGGGTGGCTCTTCTTATGGCGCTGGAACATTTGCAGCAGATGGTTCCC
GCCAACCCACAGATCTAGAACTCCAACAGGCCTTTCACCAGGGAAAGTAT
GTTGCTGAAATAGCAAAGAAGCTCAAACGTTGATCTTAAGAAATTCTTGT
ACATGATGTATCTGATAGTGTGAAGAAATACTCAACTGTAATTTATCAAG
GAAAACCTATGAAATAAAATCTTCTACTCAAAAAAAAAAAAAAAAAAAAA
AAAAA
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