CK938935

Overview
NameCK938935
Unique NameCK938935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BURP8 (Flavoprotein wrbA OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=wrbA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  314 FWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            F ST    GGQE T  + +T L H GM+ V L Y+   GM  M E+ GG+ YGA T AA DGSRQP+ ++L+ A HQG+ VA+ A KL
Sbjct:  111 FASTATQHGGQETTLFSIITNLMHLGMIIVGLPYSH-QGMMNMTEIVGGAPYGATTIAAGDGSRQPSAIDLEGARHQGELVAKTAAKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA2_RHIME (Flavoprotein wrbA 2 OS=Rhizobium meliloti GN=wrbA2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  308 GIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            G F STG   GGQE T  + +T L H GM+ V L Y+   G   ++E+ GG+ YGA T A  DGSRQP+ ++L  AFHQG+ VA  A  L
Sbjct:  109 GAFVSTGTQHGGQETTLFSIITNLMHFGMVIVGLPYSH-QGQMSVDEIVGGAPYGATTVAGGDGSRQPSQIDLAGAFHQGEIVARTAAAL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_RHOCS (Flavoprotein wrbA OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=wrbA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  314 FWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            F ST    GGQE T  + +T L HHGM+ V L Y++  G+  + +VKGG+ YGA T A  DGSR+PT++EL  A +QG  VA  A KL+
Sbjct:  112 FTSTASQHGGQETTLFSILTNLLHHGMVVVGLPYSY-EGLSGVEQVKGGTPYGASTIADGDGSRRPTEVELGGARYQGALVARTAAKLR 199          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_RHISN (Flavoprotein wrbA OS=Rhizobium sp. (strain NGR234) GN=wrbA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  314 FWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            F S+    GGQE T L  +  + HHGM+ V L Y F  G   ++E+KGGS YGA T    DGSRQP+++EL  A  QG +VA IA KL
Sbjct:  111 FTSSATQHGGQESTILGLIPTMLHHGMVVVGLPYAF-QGQMGIDEIKGGSPYGASTITGGDGSRQPSEIELDAARFQGAHVARIAAKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_AZOC5 (Flavoprotein wrbA OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=wrbA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  314 FWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            F ST    GGQE T  + +T L H GM+ V L Y+   G   M+E+ GG+ YGA T AA DGSRQP++++L  A HQG+ VA+ A KL
Sbjct:  111 FTSTATQHGGQETTLFSIITNLLHFGMVIVGLPYSH-QGQMSMSEIVGGAPYGATTLAAGDGSRQPSEIDLAGARHQGELVAKTAAKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ALHEH (Flavoprotein wrbA OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG   GGQE T  +  T L HHGM+ V + Y+  + +  M+E+ GG+ YGA T A  DGSRQP++ EL  A  QG++VAEI +KL
Sbjct:  110 VFTSTGSQHGGQETTLTSMQTTLMHHGMVIVGVPYSC-AALTNMDEITGGTPYGASTLAGPDGSRQPSENELTIARFQGRHVAEITQKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ZYMMO (Flavoprotein wrbA OS=Zymomonas mobilis GN=wrbA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F ST    GGQE T  + ++ L HHG++   L Y+F  G   ++EV GG+ YGA T AA DGSRQP+  EL  A   GK+VAE+AKKL
Sbjct:  110 VFTSTATQHGGQETTLYSLMSSLLHHGLVISGLPYSF-QGQGRLDEVTGGAPYGATTIAASDGSRQPSKNELDGAKFLGKHVAELAKKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_RHOPT (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain TIE-1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  308 GIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTF-AADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            G F ST    GGQE T  + +T L H GM+ V L Y FG  M  +++V GG+ YGA T    DGSRQP++ EL  A +QGK +AE A KL
Sbjct:  109 GAFTSTATQHGGQETTLFSIITNLLHFGMVVVGLNYGFGDQM-RLDQVTGGAPYGATTITGGDGSRQPSETELAGARYQGKTIAETAIKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_RHOPA (Flavoprotein wrbA OS=Rhodopseudomonas palustris GN=wrbA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  308 GIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTF-AADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            G F ST    GGQE T  + +T L H GM+ V L Y FG  M  +++V GG+ YGA T    DGSRQP++ EL  A +QGK +AE A KL
Sbjct:  109 GAFTSTATQHGGQETTLFSIITNLLHFGMVVVGLNYGFGDQM-RLDQVTGGAPYGATTITGGDGSRQPSETELAGARYQGKTIAETAIKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_GEOSF (Flavoprotein wrbA OS=Geobacter sp. (strain FRC-32) GN=wrbA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 45/89 (50.56%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F S+    GGQE T L+  T L HHGM+ V L Y F  G    +E+ GGS YGA T A   G RQPT+ EL  A +QGK+VA IA KL
Sbjct:  114 VFASSNTQHGGQESTILSFHTTLLHHGMVIVGLPYAF-QGQMRNDEITGGSPYGASTVAGTQGERQPTENELAAARYQGKHVASIAYKL 201          
The following BLAST results are available for this feature:
BLAST of CK938935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
WRBA_BURP84.825e-1450.00Flavoprotein wrbA OS=Burkholderia phymatum (strain... [more]
WRBA2_RHIME4.825e-1447.78Flavoprotein wrbA 2 OS=Rhizobium meliloti GN=wrbA2... [more]
WRBA_RHOCS6.302e-1448.31Flavoprotein wrbA OS=Rhodospirillum centenum (stra... [more]
WRBA_RHISN6.302e-1448.86Flavoprotein wrbA OS=Rhizobium sp. (strain NGR234)... [more]
WRBA_AZOC56.302e-1448.86Flavoprotein wrbA OS=Azorhizobium caulinodans (str... [more]
WRBA_ALHEH6.302e-1448.31Flavoprotein wrbA OS=Alkalilimnicola ehrlichei (st... [more]
WRBA_ZYMMO8.230e-1449.44Flavoprotein wrbA OS=Zymomonas mobilis GN=wrbA PE=... [more]
WRBA_RHOPT8.230e-1448.89Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]
WRBA_RHOPA8.230e-1448.89Flavoprotein wrbA OS=Rhodopseudomonas palustris GN... [more]
WRBA_GEOSF8.230e-1450.56Flavoprotein wrbA OS=Geobacter sp. (strain FRC-32)... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_D05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938935 ID=CK938935; Name=CK938935; organism=Citrus sinensis; type=EST; length=705bp
GGGTGCTTAAGAGGAAAGGAAAATTCTTGGGTGTTCCGAATGCATTGCTC
TTTTTCCAGTTATTTCTTGCCGTGTGTATGCTTCAACCAATCATTATGAT
ATGCACACACACACGGCAAATTTGTGAATGGATAATGAAAAATGCTCTAG
GAGCGCCAAAGACCTTAGGAGGCCATTTGATGATGCAAAATTTTCCTTGA
CTTGATTGGAATACATAGGTACCTGAGACACTTTCCAGTGTGATTTTGCA
AAAGATGAAAGCTCCTCCTAAAACAAATGACGTGCCAGTGATCAGGCCCC
ACCTGCTGGAATCTTCTGGAGTACTGGTTTTCATGGGGGAGGCCAGGAGC
TTACTGCATTGACTGCCGTAACACAACTAGCACATCATGGTATGCTGTTT
GTTCCACTTGGTTACACCTTTGGCAGCGGCATGTTTGAGATGAATGAGGT
GAAGGGTGGCTCTTCTTATGGCGCTGGAACATTTGCAGCAGATGGTTCCC
GCCAACCCACAGATCTAGAACTCCAACAGGCCTTTCACCAGGGAAAGTAT
GTTGCTGAAATAGCAAAGAAGCTCAAACGTTGATCTTAAGAAATTCTTGT
ACATGATGTATCTGATAGTGTGAAGAAATACTCAACTGTAATTTATCAAG
GAAAACCTATGAAATAAAATCTTCTACTCAAAAAAAAAAAAAAAAAAAAA
AAAAA
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