CK938935

Overview
NameCK938935
Unique NameCK938935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SYNFM (Flavoprotein wrbA OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=wrbA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.016e-13
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAAD-GSRQPTDLELQQAFHQGKYVAEIAKKLKR 580
            +F S+    GGQE T L+    L H GM+ V L Y+F  G   M+E+ GGS YGA T A   G+R P+D EL  A +QG++VAEIA+KL R
Sbjct:  114 VFTSSNTQHGGQESTILSFHINLLHQGMVIVGLPYSF-QGQSTMDEITGGSPYGASTIAGPTGARTPSDNELAGARYQGRHVAEIARKLTR 203          

HSP 2 Score: 21.557 bits (44), Expect = 1.016e-13
Identity = 14/41 (34.15%), Postives = 22/41 (53.66%), Query Frame = 3
Query:  219 VPETLSSVILQKM---KAPPKTNDVPVIRPHLLESSGVLVF 332
            VPETLS+ IL  M   +A  +   +PV     L ++  ++F
Sbjct:   38 VPETLSAEILASMGATEAQKQFAHIPVCTVDELGAADAVIF 78          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_METS4 (Flavoprotein wrbA OS=Methylobacterium sp. (strain 4-46) GN=wrbA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F S+    GGQE T L+  T L HHGM+ V L Y F  G   +++V G S YGA T A  DGSRQP+ +EL  A +QG++VA IA KL
Sbjct:  110 VFTSSASQHGGQESTILSFHTVLLHHGMVLVGLPYAF-QGQLGVSQVMGNSPYGASTIADGDGSRQPSPIELDGARYQGRHVAGIAAKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_MARMS (Flavoprotein wrbA OS=Marinomonas sp. (strain MWYL1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGG E T  +  T L HHG + V L Y+    + +++EVKGGS  GAGT A ADGSR P+D E+  A  QGK+VAEIA KL
Sbjct:  110 VFTSTGT-GGGNETTIQSFHTTLFHHGFVVVGLPYSCPE-LADISEVKGGSPLGAGTIAGADGSRMPSDKEIAMARFQGKHVAEIAAKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA1_RHIME (Flavoprotein wrbA 1 OS=Rhizobium meliloti GN=wrbA1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  314 FWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            F S+    GGQE T L  +  + HHGM+ V L Y F  G   + EVKGGS YGA T    DGSRQP+ +EL+ A  QG +VA IA KL
Sbjct:  111 FTSSATQHGGQESTILGLIPTMMHHGMVVVGLPYAF-QGQMGVEEVKGGSPYGASTITGGDGSRQPSAVELEAARFQGAHVARIAAKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_OLICO (Flavoprotein wrbA OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=wrbA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  308 GIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            G F ST    GGQE+T  + +T L H GM+ V L Y F +G   + EV GG+ YGA T    DGSR P++ EL  A +QG+ +AE AKKL
Sbjct:  109 GAFTSTATQHGGQEMTLFSIITNLLHFGMVVVGLNYGF-AGQMGVKEVTGGAPYGATTITDGDGSRLPSENELNGARYQGRTIAETAKKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_RHOPS (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain BisB5) GN=wrbA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  308 GIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTF-AADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            G F ST    GGQE T  + +T L H GM+ V L Y F +G  +++EV GG+ YGA T    DGSRQP+  EL  A +QGK +AE A KL
Sbjct:  109 GAFTSTATQHGGQETTLFSIITNLLHFGMVVVGLNYGF-AGQMKLDEVTGGAPYGATTITGGDGSRQPSANELAGARYQGKTIAETAIKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_RHOPB (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain BisB18) GN=wrbA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  308 GIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTF-AADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            G F ST    GGQE T  + +T L H GM+ V L Y +G G+  ++EV GGS YGA T    DG+RQP+  EL  A +QGK +AE A KL
Sbjct:  109 GAFTSTASQHGGQETTLFSIITNLLHFGMVVVGLNYGYG-GLTTLDEVAGGSPYGATTITGGDGARQPSANELGGARYQGKVIAETAIKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_METRJ (Flavoprotein wrbA OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=wrbA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLKR 580
            +F ST    GGQE T  +  T L HHGM+ V L Y+F  G   +  VKG + YGA T A  DGSRQP+ +EL+ A  QG++VA IA KL R
Sbjct:  110 VFTSTASQHGGQETTLTSFHTVLFHHGMVVVGLPYSF-QGQAGVEAVKGNTPYGASTIADGDGSRQPSAVELEGARFQGRHVAGIAAKLAR 199          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_ACICJ (Flavoprotein wrbA OS=Acidiphilium cryptum (strain JF-5) GN=wrbA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG   GGQE T  +  T L HHGM+ V + Y+    +  MNE+ GG+ YGA T A ADGSRQP+  EL  A  QGK+VA IA KL
Sbjct:  110 VFASTGTQHGGQETTITSFHTTLFHHGMIVVGVPYS-NPELTNMNEITGGTPYGATTLAGADGSRQPSANELAIARAQGKHVAGIAAKL 197          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_RHOP5 (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain BisA53) GN=wrbA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 44/90 (48.89%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  308 GIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTF-AADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            G F ST    GGQE T  + +T L H GM+ V L Y F +G   ++EV GGS YGA T    DGSRQP+  EL  A +QG+ +AE A KL
Sbjct:  109 GAFTSTATQHGGQETTLFSIITNLLHFGMVVVGLNYGF-AGQMTLDEVTGGSPYGATTITGGDGSRQPSANELAGARYQGQVIAETAIKL 197          
The following BLAST results are available for this feature:
BLAST of CK938935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
WRBA_SYNFM1.016e-1348.35Flavoprotein wrbA OS=Syntrophobacter fumaroxidans ... [more]
WRBA_METS41.404e-1349.44Flavoprotein wrbA OS=Methylobacterium sp. (strain ... [more]
WRBA_MARMS1.404e-1352.81Flavoprotein wrbA OS=Marinomonas sp. (strain MWYL1... [more]
WRBA1_RHIME1.404e-1350.00Flavoprotein wrbA 1 OS=Rhizobium meliloti GN=wrbA1... [more]
WRBA_OLICO1.833e-1347.78Flavoprotein wrbA OS=Oligotropha carboxidovorans (... [more]
WRBA_RHOPS2.395e-1348.89Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]
WRBA_RHOPB2.395e-1348.89Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]
WRBA_METRJ3.127e-1349.45Flavoprotein wrbA OS=Methylobacterium radiotoleran... [more]
WRBA_ACICJ3.127e-1351.69Flavoprotein wrbA OS=Acidiphilium cryptum (strain ... [more]
WRBA_RHOP54.085e-1348.89Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_D05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938935 ID=CK938935; Name=CK938935; organism=Citrus sinensis; type=EST; length=705bp
GGGTGCTTAAGAGGAAAGGAAAATTCTTGGGTGTTCCGAATGCATTGCTC
TTTTTCCAGTTATTTCTTGCCGTGTGTATGCTTCAACCAATCATTATGAT
ATGCACACACACACGGCAAATTTGTGAATGGATAATGAAAAATGCTCTAG
GAGCGCCAAAGACCTTAGGAGGCCATTTGATGATGCAAAATTTTCCTTGA
CTTGATTGGAATACATAGGTACCTGAGACACTTTCCAGTGTGATTTTGCA
AAAGATGAAAGCTCCTCCTAAAACAAATGACGTGCCAGTGATCAGGCCCC
ACCTGCTGGAATCTTCTGGAGTACTGGTTTTCATGGGGGAGGCCAGGAGC
TTACTGCATTGACTGCCGTAACACAACTAGCACATCATGGTATGCTGTTT
GTTCCACTTGGTTACACCTTTGGCAGCGGCATGTTTGAGATGAATGAGGT
GAAGGGTGGCTCTTCTTATGGCGCTGGAACATTTGCAGCAGATGGTTCCC
GCCAACCCACAGATCTAGAACTCCAACAGGCCTTTCACCAGGGAAAGTAT
GTTGCTGAAATAGCAAAGAAGCTCAAACGTTGATCTTAAGAAATTCTTGT
ACATGATGTATCTGATAGTGTGAAGAAATACTCAACTGTAATTTATCAAG
GAAAACCTATGAAATAAAATCTTCTACTCAAAAAAAAAAAAAAAAAAAAA
AAAAA
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