CK938869

Overview
NameCK938869
Unique NameCK938869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938869 vs. ExPASy Swiss-Prot
Match: CYT3_ORYSJ (Cysteine proteinase inhibitor 3 OS=Oryza sativa subsp. japonica GN=Os05g0409300 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.066e-12
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:  286 GTMHHLTVEAIDAGTKKLYEAKVWVKPWLNFKDLQEFKHVGDSPA-SFTSSDLGVKKD 456
            GT+H L +E +D+G K LY AKVWVKPWL+FK + EF+HVGDS + S T++D    +D
Sbjct:   94 GTLHDLMLEVVDSGKKSLYSAKVWVKPWLDFKAVVEFRHVGDSQSQSATAADDNAGQD 151

HSP 2 Score: 23.8682 bits (50), Expect = 2.066e-12
Identity = 13/36 (36.11%), Postives = 21/36 (58.33%), Query Frame = 3 
Query:  123 DKMALLGGVQESRGAENSNEIESLARFAIEEHNKKR 230
            D+  L+ G+  +   E + E E  ARFA+ E+NK +
Sbjct:   41 DESVLVRGMLAAIRREQA-EAEDAARFAVAEYNKNQ 75
[Close]
BLAST of CK938869 vs. ExPASy Swiss-Prot
Match: CYTA_HELAN (Cysteine proteinase inhibitor A OS=Helianthus annuus PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.442e-11
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:  223 KKENALLXXXXXXXXXXXXXXGTMHHLTVEAIDAGTKKLYEAKVWVKPWLNFKDLQEFKHV 405
            KK+NALL              G M+++T+EA + G KK YEAKVWVKPW NFK+LQEFK V
Sbjct:   17 KKQNALLEFGKVVNTKEQVVAGKMYYITLEATNGGVKKTYEAKVWVKPWENFKELQEFKPV 77
The following BLAST results are available for this feature:
BLAST of CK938869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CYT3_ORYSJ2.066e-1255.17Cysteine proteinase inhibitor 3 OS=Oryza sativa su... [more]
CYTA_HELAN3.442e-1154.10Cysteine proteinase inhibitor A OS=Helianthus annu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004437_C06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938869 ID=CK938869; Name=CK938869; organism=Citrus sinensis; type=EST; length=918bp
GGGGACAGCAAATCTATTTAAGCACCATGGCCAAATTCACCAATCCCTTG
ATTTCATTAAATACTCTCTCTCTGCTTCTGTTTCTGATCATATCTGCGAC
GGCAAATTCTGAATTTTGCGACGATAAAATGGCCTTGCTTGGCGGAGTAC
AGGAATCCCGAGGTGCCGAAAACAGCAATGAAATTGAAAGCCTCGCTCGA
TTCGCCATCGAAGAACACAACAAAAAAAGAGAATGCTTTGCTGGAGTTTG
TGAAAGTGGTGAAGGCGCAAGAGCAGGTGGTTGCTGGTACCATGCATCAT
CTAACAGTGGAGGCTATTGATGCTGGTACGAAGAAGCTATATGAAGCGAA
AGTGTGGGTCAAGCCATGGTTGAATTTTAAGGATTTGCAGGAATTTAAGC
ACGTTGGTGATTCCCCGGCCTCTTTCACCTCTTCAGATCTTGGTGTTAAG
AAAGATGGTCATTGCCCTGGATGGCAGGCAGTTCCCGTACATGATCCTCA
AGTCCAGGATGCAGCCAATCATGCTATCCAAACCATTCAGCAAAGGTCCA
ACTCCCTCTTCCCTTATGTACTTCAGGAGATTGTTCATGCAAAAGCTGAG
GTGATTGAGGATTTTGCGAAATTTGCCATGCTTCTGAAAGTGAAGAGGGG
AGAAAAAGAGGAGAAGCTCAATGTTGAAGTACACAAGAAGGAGGGCACAT
TCCATCTCAATCAAATGCAACAAGATCAAGAGTGATTTTGGAGATCATTG
CTTGTGTTTTGTAGGGAAATTTATGCTTATATCTTGTTCATGTTGGTAGT
ATTTCTGTTTATACATATCGGTAGCTGTATTTCTCTATCGCTACTGTTGT
TCCATGTATCAGTTTCCCTAAGCTAGACCGTTGCTGTGGTAAAAAGATCT
TTGATCTTCTATTTAAAA
back to top