CK938862

Overview
NameCK938862
Unique NameCK938862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATC_TRYBB (Probable calcium-transporting ATPase OS=Trypanosoma brucei brucei GN=TBA1 PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.682e-70
Identity = 143/269 (53.16%), Postives = 180/269 (66.91%), Query Frame = 3
Query:    9 EPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGTNLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLL 815
            +P HK ++V+LLK++  + AMTGDGVNDAPALK ADIGIAMG +GTEVAK AS MVLADD+F+T+V AV EGR+IYNN K FIRY+ISSNIGEV  I  T   G+PE L PVQLLWVNLVTDG PATALGFN PD+DIM++ PRR ++ +++ W+  RY+VIG+YVG+ATVG F+ W+    F         H L TY+                S  T G  +   N             A  ++LS+LV +EM N+LNALSE+ SL+
Sbjct:  679 DPSHKMQLVQLLKDERLICAMTGDGVNDAPALKKADIGIAMG-SGTEVAKSASKMVLADDNFATVVKAVQEGRAIYNNTKQFIRYLISSNIGEVVCILVTGLFGLPEALSPVQLLWVNLVTDGLPATALGFNAPDRDIMEQRPRRMEEPIVNGWLFMRYMVIGVYVGLATVGGFLWWFLRHGF-------SWHDLTTYT--------------ACSDMTNGTCLLLANPQ----------TARAIALSILVVVEMLNALNALSENASLI 915          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT2A3_HUMAN (Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Homo sapiens GN=ATP2A3 PE=1 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 3.747e-70
Identity = 149/271 (54.98%), Postives = 188/271 (69.37%), Query Frame = 3
Query:    9 EPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGTNLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTM 821
            EP HK  IV  L+   E+ AMTGDGVNDAPALK A+IGIAMG +GT VAK A++MVL+DD+F++IV+AV EGR+IY+NMK FIRY+ISSN+GEV  IF TA LG+PE LIPVQLLWVNLVTDG PATALGFNPPD DIM+K PR   ++LIS W+ FRYL IG+YVG+ATV     W+ + +        +G   + + QL N+ +C           +  N +F   D  C+ F        T++LSVLV IEM N+LN++SE+ SLL M
Sbjct:  680 EPAHKSRIVENLQSFNEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKSAAEMVLSDDNFASIVAAVEEGRAIYSNMKQFIRYLISSNVGEVVCIFLTAILGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKLPRSPREALISGWLFFRYLAIGVYVGLATVAAATWWFVYDA--------EGPH-INFYQLRNFLKC-----------SEDNPLFAGID--CEVFESR--FPTTMALSVLVTIEMCNALNSVSENQSLLRM 925          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATCL_BACSU (Calcium-transporting ATPase OS=Bacillus subtilis GN=yloB PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.646e-51
Identity = 93/177 (52.54%), Postives = 133/177 (75.14%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWY 542
            P HK +IV+  +E+G +VAMTGDGVNDAPA+K ADIG++MGI GT+VAKEAS +VL DD+F+TI SA+ EGR+IY N++ FIRY+++SN+GE+  + F   L +P  L+P+Q+LWVNLVTDG PA ALG + P+ D+MK+ PR   + + +  + ++ +  G  +G+AT+  FII Y
Sbjct:  611 PEHKLKIVKAYQENGHIVAMTGDGVNDAPAIKQADIGVSMGITGTDVAKEASSLVLVDDNFATIKSAIKEGRNIYENIRKFIRYLLASNVGEILVMLFAMLLALPLPLVPIQILWVNLVTDGLPAMALGMDQPEGDVMKRKPRHPKEGVFARKLGWKVVSRGFLIGVATILAFIIVY 787          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT2C1_RAT (Calcium-transporting ATPase type 2C member 1 OS=Rattus norvegicus GN=Atp2c1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.001e-47
Identity = 87/175 (49.71%), Postives = 126/175 (72.00%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVF 530
            A PRHK +I++ L+++G VVAMTGDGVNDA ALK ADIG+AMG  GT+V KEA+DM+L DDDF TI+SA+ EG+ IYNN+K F+R+ +S++I  +  I     +  P  L  +Q+LW+N++ DGPPA +LG  P DKD+++KPPR   DS+++  ++ + LV  + +   T+ VF
Sbjct:  620 ASPRHKMKIIKSLQKNGSVVAMTGDGVNDAVALKAADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSSIIIVCGTLFVF 794          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT2C1_PONAB (Calcium-transporting ATPase type 2C member 1 OS=Pongo abelii GN=ATP2C1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.001e-47
Identity = 87/175 (49.71%), Postives = 126/175 (72.00%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVF 530
            A PRHK +I++ L+++G VVAMTGDGVNDA ALK ADIG+AMG  GT+V KEA+DM+L DDDF TI+SA+ EG+ IYNN+K F+R+ +S++I  +  I     +  P  L  +Q+LW+N++ DGPPA +LG  P DKD+++KPPR   DS+++  ++ + LV  + +   T+ VF
Sbjct:  619 ASPRHKMKIIKSLQKNGSVVAMTGDGVNDAVALKAADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSSIIIVCGTLFVF 793          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT2C1_HUMAN (Calcium-transporting ATPase type 2C member 1 OS=Homo sapiens GN=ATP2C1 PE=1 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 2.001e-47
Identity = 87/175 (49.71%), Postives = 126/175 (72.00%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVF 530
            A PRHK +I++ L+++G VVAMTGDGVNDA ALK ADIG+AMG  GT+V KEA+DM+L DDDF TI+SA+ EG+ IYNN+K F+R+ +S++I  +  I     +  P  L  +Q+LW+N++ DGPPA +LG  P DKD+++KPPR   DS+++  ++ + LV  + +   T+ VF
Sbjct:  620 ASPRHKMKIIKSLQKNGSVVAMTGDGVNDAVALKAADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSSIIIVCGTLFVF 794          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT2C1_BOVIN (Calcium-transporting ATPase type 2C member 1 OS=Bos taurus GN=ATP2C1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.001e-47
Identity = 87/175 (49.71%), Postives = 126/175 (72.00%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVF 530
            A PRHK +I++ L+++G VVAMTGDGVNDA ALK ADIG+AMG  GT+V KEA+DM+L DDDF TI+SA+ EG+ IYNN+K F+R+ +S++I  +  I     +  P  L  +Q+LW+N++ DGPPA +LG  P DKD+++KPPR   DS+++  ++ + LV  + +   T+ VF
Sbjct:  654 ASPRHKMKIIKSLQKNGSVVAMTGDGVNDAVALKAADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSSIIIVCGTLFVF 828          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATC1_YEAST (Calcium-transporting ATPase 1 OS=Saccharomyces cerevisiae GN=PMR1 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.822e-47
Identity = 86/176 (48.86%), Postives = 129/176 (73.30%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFI 533
            A P HK  IVR L++ G+VVAMTGDGVNDAPALKL+DIG++MG  GT+VAKEASDMVL DDDFSTI++A+ EG+ I+NN++ F+ + +S+++  ++ +  + A  +P  L  +Q+LW+N++ DGPPA +LG  P D ++MKKPPR+  D +++  ++ R L     + + TV +F+
Sbjct:  656 ATPEHKLNIVRALRKRGDVVAMTGDGVNDAPALKLSDIGVSMGRIGTDVAKEASDMVLTDDDFSTILTAIEEGKGIFNNIQNFLTFQLSTSVAALSLVALSTAFKLPNPLNAMQILWINILMDGPPAQSLGVEPVDHEVMKKPPRKRTDKILTHDVMKRLLTTAACIIVGTVYIFV 831          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT2C1_MOUSE (Calcium-transporting ATPase type 2C member 1 OS=Mus musculus GN=Atp2c1 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.212e-46
Identity = 86/175 (49.14%), Postives = 125/175 (71.43%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVF 530
            A PRHK +I++ L+++G VVAMTGDGVNDA ALK ADIG+AMG  GT+V KEA+DM+L DDDF TI+SA+ EG+ IYNN+K F+R+ +S++I  +  I     +  P  L  +Q+LW+N++ DG PA +LG  P DKD+++KPPR   DS+++  ++ + LV  + +   T+ VF
Sbjct:  619 ASPRHKMKIIKSLQKNGAVVAMTGDGVNDAVALKAADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGSPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSSIIIVCGTLFVF 793          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATC1_SCHPO (Calcium-transporting ATPase 1 OS=Schizosaccharomyces pombe GN=pmr1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.295e-45
Identity = 89/181 (49.17%), Postives = 126/181 (69.61%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGS 554
            P+HK +IV  L+  G+VVAMTGDGVNDAPALKLADIGIAMG  GT+VAKEA+DM+L DD F+TI+SAV EG+ I+NN+K FI + +S+++  ++ I  ++  G    L  +Q+LW+N++ DGPPA +LG    D+D+M KPPR  +  +IS  +L R L+    +   T+ VF +    G+
Sbjct:  605 PQHKMKIVEALQSLGDVVAMTGDGVNDAPALKLADIGIAMGRQGTDVAKEAADMILTDDSFATILSAVEEGKGIFNNIKNFITFQLSTSVAALSLIAISSVFGFQNPLNAMQILWINILMDGPPAQSLGVESVDEDVMMKPPRPRNAPIISVQLLQRVLLSAFIIVTVTIVVFRVQMQDGN 785          
The following BLAST results are available for this feature:
BLAST of CK938862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
ATC_TRYBB1.682e-7053.16Probable calcium-transporting ATPase OS=Trypanosom... [more]
AT2A3_HUMAN3.747e-7054.98Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
ATCL_BACSU6.646e-5152.54Calcium-transporting ATPase OS=Bacillus subtilis G... [more]
AT2C1_RAT2.001e-4749.71Calcium-transporting ATPase type 2C member 1 OS=Ra... [more]
AT2C1_PONAB2.001e-4749.71Calcium-transporting ATPase type 2C member 1 OS=Po... [more]
AT2C1_HUMAN2.001e-4749.71Calcium-transporting ATPase type 2C member 1 OS=Ho... [more]
AT2C1_BOVIN2.001e-4749.71Calcium-transporting ATPase type 2C member 1 OS=Bo... [more]
ATC1_YEAST5.822e-4748.86Calcium-transporting ATPase 1 OS=Saccharomyces cer... [more]
AT2C1_MOUSE2.212e-4649.14Calcium-transporting ATPase type 2C member 1 OS=Mu... [more]
ATC1_SCHPO9.295e-4549.17Calcium-transporting ATPase 1 OS=Schizosaccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_D07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938862 ID=CK938862; Name=CK938862; organism=Citrus sinensis; type=EST; length=845bp
GGGGGGCTGAACCAAGGCACAAGCAAGAGATAGTGAGACTGCTTAAAGAA
GATGGGGAGGTAGTTGCCATGACTGGCGATGGAGTAAATGATGCTCCTGC
TCTGAAACTGGCTGATATTGGAATTGCCATGGGGATTGCTGGAACCGAGG
TTGCAAAGGAAGCTTCCGACATGGTATTGGCAGATGATGATTTTAGTACC
ATTGTTTCTGCTGTTGGTGAGGGCAGATCCATTTACAACAACATGAAGGC
TTTTATCAGGTACATGATATCTTCAAACATCGGTGAGGTCGCCTCTATAT
TCTTTACAGCAGCTTTAGGTATACCTGAAGGCCTGATACCTGTCCAGCTT
CTGTGGGTCAATCTTGTTACGGATGGACCTCCTGCAACAGCATTGGGATT
CAATCCTCCAGATAAAGACATAATGAAGAAACCCCCTCGTCGGAGTGATG
ACTCTCTAATTTCTGCTTGGATTTTATTCCGCTATCTGGTTATCGGGCTG
TATGTTGGAATAGCAACGGTTGGTGTTTTCATCATTTGGTATACACATGG
TTCTTTCTTGGGCACCAATCTCATTGGCGACGGTCACAGCCTTGTCACAT
ACTCCCAGCTCACTAACTGGGGCCAGTGCCCATCCTGGGGGAATTTTACC
GTTTCTCCCTTCACAGCTGGTAATCAGGTTTTCACATTCAATGATAACCC
TTGTGATTATTTCCATGGCGGCAAAGTAAAAGCAATGACACTTTCTCTTT
CTGTGCTGGTCGCCATTGAAATGTTTAACTCCCTCAATGCCCTCTCTGAG
GATGGAAGCCTATTGACAATGCCCCCATGGGNNNACCCTTGGCTC
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