CK938862

Overview
NameCK938862
Unique NameCK938862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATKB_SALNS (Potassium-transporting ATPase B chain OS=Salmonella newport (strain SL254) GN=kdpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASI 299
            A P  K  ++R  + +G +VAMTGDG NDAPAL  AD+ +AM  +GT+ AKEA +MV  D + + ++  V  G+ +     +   + I++++ +  +I
Sbjct:  494 ATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMN-SGTQAAKEAGNMVDLDSNPTKLIEVVHIGKQMLMTRGSLTTFSIANDVAKYFAI 590          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATKB_SALHS (Potassium-transporting ATPase B chain OS=Salmonella heidelberg (strain SL476) GN=kdpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASI 299
            A P  K  ++R  + +G +VAMTGDG NDAPAL  AD+ +AM  +GT+ AKEA +MV  D + + ++  V  G+ +     +   + I++++ +  +I
Sbjct:  494 ATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMN-SGTQAAKEAGNMVDLDSNPTKLIEVVHIGKQMLMTRGSLTTFSIANDVAKYFAI 590          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATKB_SALG2 (Potassium-transporting ATPase B chain OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=kdpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASI 299
            A P  K  ++R  + +G +VAMTGDG NDAPAL  AD+ +AM  +GT+ AKEA +MV  D + + ++  V  G+ +     +   + I++++ +  +I
Sbjct:  494 ATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMN-SGTQAAKEAGNMVDLDSNPTKLIEVVHIGKQMLMTRGSLTTFSIANDVAKYFAI 590          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATKB_SALEP (Potassium-transporting ATPase B chain OS=Salmonella enteritidis PT4 (strain P125109) GN=kdpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASI 299
            A P  K  ++R  + +G +VAMTGDG NDAPAL  AD+ +AM  +GT+ AKEA +MV  D + + ++  V  G+ +     +   + I++++ +  +I
Sbjct:  494 ATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMN-SGTQAAKEAGNMVDLDSNPTKLIEVVHIGKQMLMTRGSLTTFSIANDVAKYFAI 590          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATKB_SALDC (Potassium-transporting ATPase B chain OS=Salmonella dublin (strain CT_02021853) GN=kdpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASI 299
            A P  K  ++R  + +G +VAMTGDG NDAPAL  AD+ +AM  +GT+ AKEA +MV  D + + ++  V  G+ +     +   + I++++ +  +I
Sbjct:  494 ATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMN-SGTQAAKEAGNMVDLDSNPTKLIEVVHIGKQMLMTRGSLTTFSIANDVAKYFAI 590          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATKB_SALCH (Potassium-transporting ATPase B chain OS=Salmonella choleraesuis GN=kdpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASI 299
            A P  K  ++R  + +G +VAMTGDG NDAPAL  AD+ +AM  +GT+ AKEA +MV  D + + ++  V  G+ +     +   + I++++ +  +I
Sbjct:  494 ATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMN-SGTQAAKEAGNMVDLDSNPTKLIEVVHIGKQMLMTRGSLTTFSIANDVAKYFAI 590          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATKB_SALA4 (Potassium-transporting ATPase B chain OS=Salmonella agona (strain SL483) GN=kdpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASI 299
            A P  K  ++R  + +G +VAMTGDG NDAPAL  AD+ +AM  +GT+ AKEA +MV  D + + ++  V  G+ +     +   + I++++ +  +I
Sbjct:  494 ATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMN-SGTQAAKEAGNMVDLDSNPTKLIEVVHIGKQMLMTRGSLTTFSIANDVAKYFAI 590          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATKB_ENT38 (Potassium-transporting ATPase B chain OS=Enterobacter sp. (strain 638) GN=kdpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASI 299
            A P  K  ++R  + +G +VAMTGDG NDAPAL  AD+ +AM  +GT+ AKEA +MV  D + + ++  V  G+ +     +   + I++++ +  +I
Sbjct:  494 ATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMN-SGTQAAKEAGNMVDLDSNPTKLIEVVHIGKQMLMTRGSLTTFSIANDVAKYFAI 590          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATCU1_RHIME (Copper-transporting ATPase 1 OS=Rhizobium meliloti GN=actP1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEV 290
            P  K + V+ L+E G  VA  GDG+NDAPAL  AD+GIA+G  GT++A E++D+VL   D   +  A+   ++   N+K  + +  + N+  V
Sbjct:  691 PDGKVDAVKRLREGGRKVAFIGDGINDAPALTEADVGIAVG-TGTDIAIESADVVLMSGDLIGVPKAIALSKATIRNIKQNLFWAFAYNVSLV 782          
The following BLAST results are available for this feature:
BLAST of CK938862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
ATKB_SALNS8.781e-1135.71Potassium-transporting ATPase B chain OS=Salmonell... [more]
ATKB_SALHS8.781e-1135.71Potassium-transporting ATPase B chain OS=Salmonell... [more]
ATKB_SALG28.781e-1135.71Potassium-transporting ATPase B chain OS=Salmonell... [more]
ATKB_SALEP8.781e-1135.71Potassium-transporting ATPase B chain OS=Salmonell... [more]
ATKB_SALDC8.781e-1135.71Potassium-transporting ATPase B chain OS=Salmonell... [more]
ATKB_SALCH8.781e-1135.71Potassium-transporting ATPase B chain OS=Salmonell... [more]
ATKB_SALA48.781e-1135.71Potassium-transporting ATPase B chain OS=Salmonell... [more]
ATKB_ENT388.781e-1135.71Potassium-transporting ATPase B chain OS=Enterobac... [more]
ATCU1_RHIME8.781e-1138.71Copper-transporting ATPase 1 OS=Rhizobium meliloti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004437_D07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938862 ID=CK938862; Name=CK938862; organism=Citrus sinensis; type=EST; length=845bp
GGGGGGCTGAACCAAGGCACAAGCAAGAGATAGTGAGACTGCTTAAAGAA
GATGGGGAGGTAGTTGCCATGACTGGCGATGGAGTAAATGATGCTCCTGC
TCTGAAACTGGCTGATATTGGAATTGCCATGGGGATTGCTGGAACCGAGG
TTGCAAAGGAAGCTTCCGACATGGTATTGGCAGATGATGATTTTAGTACC
ATTGTTTCTGCTGTTGGTGAGGGCAGATCCATTTACAACAACATGAAGGC
TTTTATCAGGTACATGATATCTTCAAACATCGGTGAGGTCGCCTCTATAT
TCTTTACAGCAGCTTTAGGTATACCTGAAGGCCTGATACCTGTCCAGCTT
CTGTGGGTCAATCTTGTTACGGATGGACCTCCTGCAACAGCATTGGGATT
CAATCCTCCAGATAAAGACATAATGAAGAAACCCCCTCGTCGGAGTGATG
ACTCTCTAATTTCTGCTTGGATTTTATTCCGCTATCTGGTTATCGGGCTG
TATGTTGGAATAGCAACGGTTGGTGTTTTCATCATTTGGTATACACATGG
TTCTTTCTTGGGCACCAATCTCATTGGCGACGGTCACAGCCTTGTCACAT
ACTCCCAGCTCACTAACTGGGGCCAGTGCCCATCCTGGGGGAATTTTACC
GTTTCTCCCTTCACAGCTGGTAATCAGGTTTTCACATTCAATGATAACCC
TTGTGATTATTTCCATGGCGGCAAAGTAAAAGCAATGACACTTTCTCTTT
CTGTGCTGGTCGCCATTGAAATGTTTAACTCCCTCAATGCCCTCTCTGAG
GATGGAAGCCTATTGACAATGCCCCCATGGGNNNACCCTTGGCTC
back to top