CK938862

Overview
NameCK938862
Unique NameCK938862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT2C2_RAT (Calcium-transporting ATPase type 2C member 2 OS=Rattus norvegicus GN=Atp2c2 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.289e-43
Identity = 83/176 (47.16%), Postives = 125/176 (71.02%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFIIW 539
            P+HK +I++ L+E G +VAMTGDGVND+ ALK ADIGIAMG  GT+V+KEA+DM+L DDDFS I+SAV EG+ I+ N+K F+R+ +S++I  ++ I  +    +P  L  +Q+LWVN++ DGPPA +LG  P D+D +K+PPR   D++++  ++ + L+    +   T  +FI W
Sbjct:  650 PKHKVKIIKALQESGAIVAMTGDGVNDSVALKSADIGIAMGQTGTDVSKEAADMILVDDDFSAIMSAVEEGKGIFYNIKNFVRFQLSTSIAALSLITLSTVCNLPNPLNAMQILWVNIIMDGPPAQSLGVEPVDRDALKRPPRSVKDTILNRALILKILMSAAVILGGT--LFIFW 823          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATCL_SYNE7 (Probable calcium-transporting ATPase OS=Synechococcus elongatus (strain PCC 7942) GN=pacL PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.990e-43
Identity = 91/180 (50.56%), Postives = 123/180 (68.33%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGI-PEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTH 548
            P HK  IV  L+  GE VAMTGDGVNDAPALK A+IG+AMGI GT+V+KEASDMVL DD+F+TIV+AV EGR +Y N++ FI+Y++ SNIGE+ +I     LG+    L P+Q+LW+NLVTDG PA AL   P D  IM++ P    +S+ +  +    L +G+     T+ + +I Y +
Sbjct:  639 PEHKLRIVESLQRQGEFVAMTGDGVNDAPALKQANIGVAMGITGTDVSKEASDMVLLDDNFATIVAAVEEGRIVYGNIRKFIKYILGSNIGELLTIASAPLLGLGAVPLTPLQILWMNLVTDGIPALALAVEPGDPTIMQRRPHNPQESIFARGLGTYMLRVGVVFSAFTIVLMVIAYQY 818          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATC1_YARLI (Calcium-transporting ATPase 1 OS=Yarrowia lipolytica GN=PMR1 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.661e-43
Identity = 80/174 (45.98%), Postives = 126/174 (72.41%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFI 533
            P  K +IV+  +  G+VVAMTGDGVNDAPALKLADIGIAMG  GT+VAKEA+DM+L DDDF+TI+SA+ EG+ I+NN++ FI + +S+++  ++ +     +G+   L P+Q+LW+N++ DGPPA +LG  P D D+M KPPR  ++ +++  ++ + +   + + + T+ V++
Sbjct:  638 PEDKMKIVKGFQRRGDVVAMTGDGVNDAPALKLADIGIAMGQGGTDVAKEAADMILTDDDFATILSAIEEGKGIFNNIRNFITFQLSTSMAALSIVAVATIMGLENPLNPMQILWINILMDGPPAQSLGVEPVDPDVMNKPPRPRNEKVMTPDLVKKCVEAAVIILVGTMLVYV 811          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT2C2_HUMAN (Calcium-transporting ATPase type 2C member 2 OS=Homo sapiens GN=ATP2C2 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 6.661e-43
Identity = 82/176 (46.59%), Postives = 124/176 (70.45%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFIIW 539
            P+HK +I++ L+E G +VAMTGDGVNDA ALK ADIGIAMG  GT+V+KEA++M+L DDDFS I++AV EG+ I+ N+K F+R+ +S++I  ++ I  +    +P  L  +Q+LW+N++ DGPPA +LG  P DKD  ++PPR   D+++S  ++ + L+    +   T  +FI W
Sbjct:  652 PKHKLKIIKALQESGAIVAMTGDGVNDAVALKSADIGIAMGQTGTDVSKEAANMILVDDDFSAIMNAVEEGKGIFYNIKNFVRFQLSTSISALSLITLSTVFNLPSPLNAMQILWINIIMDGPPAQSLGVEPVDKDAFRQPPRSVRDTILSRALILKILMSAAIIISGT--LFIFW 825          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT2C2_MOUSE (Calcium-transporting ATPase type 2C member 2 OS=Mus musculus GN=Atp2c2 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.700e-43
Identity = 82/176 (46.59%), Postives = 125/176 (71.02%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFIIW 539
            P+HK +I++ L+E G +VAMTGDGVND+ ALK ADIGIAMG  GT+V+KEA++M+L DDDFS I+SAV EG+ I+ N+K F+R+ +S++I  ++ I  +    +P  L  +Q+LWVN++ DGPPA +LG  P D+D +++PPR   D++++  ++ R L+    +   T  +FI W
Sbjct:  650 PKHKVKIIKALQESGAIVAMTGDGVNDSVALKSADIGIAMGQTGTDVSKEAANMILVDDDFSAIMSAVEEGKGIFYNIKNFVRFQLSTSIAALSLITLSTVCNLPSPLNAMQILWVNIIMDGPPAQSLGVEPVDRDALRRPPRSVGDTILNRALILRVLMSAAVIIGGT--LFIFW 823          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: CTPF_MYCTU (Probable cation-transporting ATPase F OS=Mycobacterium tuberculosis GN=ctpF PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.940e-38
Identity = 76/161 (47.20%), Postives = 109/161 (67.70%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVI 494
            P  K  +V+ L+  G VVAMTGDGVNDAPAL+ A+IG+AMG  GTEVAK+A+DMVL DDDF+TI +AV EGR +++N+  FI + + +N+GE   I    A+G+   ++P Q+LW+N+ T       L F P +  IM +PPR  D  L++ W++ R L++
Sbjct:  621 PEQKLRLVQALQARGHVVAMTGDGVNDAPALRQANIGVAMGRGGTEVAKDAADMVLTDDDFATIEAAVEEGRGVFDNLTKFITWTLPTNLGEGLVILAAIAVGVALPILPTQILWINMTTAIALGLMLAFEPKEAGIMTRPPRDPDQPLLTGWLVRRTLLV 781          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: CTPF_MYCBO (Probable cation-transporting ATPase F OS=Mycobacterium bovis GN=ctpF PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.940e-38
Identity = 76/161 (47.20%), Postives = 109/161 (67.70%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVI 494
            P  K  +V+ L+  G VVAMTGDGVNDAPAL+ A+IG+AMG  GTEVAK+A+DMVL DDDF+TI +AV EGR +++N+  FI + + +N+GE   I    A+G+   ++P Q+LW+N+ T       L F P +  IM +PPR  D  L++ W++ R L++
Sbjct:  621 PEQKLRLVQALQARGHVVAMTGDGVNDAPALRQANIGVAMGRGGTEVAKDAADMVLTDDDFATIEAAVEEGRGVFDNLTKFITWTLPTNLGEGLVILAAIAVGVALPILPTQILWINMTTAIALGLMLAFEPKEAGIMTRPPRDPDQPLLTGWLVRRTLLV 781          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATA1_SYNY3 (Cation-transporting ATPase pma1 OS=Synechocystis sp. (strain PCC 6803) GN=pma1 PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.757e-35
Identity = 75/173 (43.35%), Postives = 113/173 (65.32%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVF 530
            P  K ++V  L+E G +VAMTGDGVNDAPALK ADIGIAMG  GTEVA+E+SDM+L DD+F++I +AV EGR++Y N++  I +++  N GE  +I  +  L +   ++ +Q+LW+N++        L F      IM++ PR  ++ LI+  +L R L++ L+  I   G+F
Sbjct:  621 PAQKLQLVEALQEKGHIVAMTGDGVNDAPALKRADIGIAMGKGGTEVARESSDMLLTDDNFASIEAAVEEGRTVYQNLRKAIAFLLPVNGGESMTILISVLLALNLPILSLQVLWLNMINSITMTVPLAFEAKSPGIMQQAPRNPNEPLITKKLLHRILLVSLFNWILIFGMF 793          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT1A1_CATCO (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Catostomus commersoni GN=atp1a1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.652e-34
Identity = 80/191 (41.88%), Postives = 117/191 (61.26%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPR--RSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGTNLIG 578
            P+ K  IV   +  G +VA+TGDGVND+PALK ADIG+AMGIAG++V+K+A+DM+L DD+F++IV+ V EGR I++N+K  I Y ++SNI E+    F     IP  L  V +L ++L TD  PA +L +   + DIMK+ PR  ++D  +    I   Y  IG+   +A    + +      FL   L+G
Sbjct:  699 PQQKLIIVEGCQRTGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLFFIIANIPLPLGTVTILCIDLGTDMLPAISLAYEAAESDIMKRQPRNPKTDKLVNERLISIAYGQIGMIQALAGFFTYFVILAENGFLPPRLLG 889          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT1A3_RAT (Sodium/potassium-transporting ATPase subunit alpha-3 OS=Rattus norvegicus GN=Atp1a3 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 9.641e-34
Identity = 79/191 (41.36%), Postives = 116/191 (60.73%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPR--RSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGTNLIG 578
            P+ K  IV   +  G +VA+TGDGVND+PALK ADIG+AMGIAG++V+K+A+DM+L DD+F++IV+ V EGR I++N+K  I Y ++SNI E+          IP  L  + +L ++L TD  PA +L +   + DIMK+ PR  R+D  +    I   Y  IG+   +     + +      FL  NL+G
Sbjct:  685 PQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIMANIPLPLGTITILCIDLGTDMVPAISLAYEAAESDIMKRQPRNPRTDKLVNERLISMAYGQIGMIQALGGFFSYFVILAENGFLPGNLVG 875          
The following BLAST results are available for this feature:
BLAST of CK938862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
AT2C2_RAT2.289e-4347.16Calcium-transporting ATPase type 2C member 2 OS=Ra... [more]
ATCL_SYNE72.990e-4350.56Probable calcium-transporting ATPase OS=Synechococ... [more]
ATC1_YARLI6.661e-4345.98Calcium-transporting ATPase 1 OS=Yarrowia lipolyti... [more]
AT2C2_HUMAN6.661e-4346.59Calcium-transporting ATPase type 2C member 2 OS=Ho... [more]
AT2C2_MOUSE8.700e-4346.59Calcium-transporting ATPase type 2C member 2 OS=Mu... [more]
CTPF_MYCTU4.940e-3847.20Probable cation-transporting ATPase F OS=Mycobacte... [more]
CTPF_MYCBO4.940e-3847.20Probable cation-transporting ATPase F OS=Mycobacte... [more]
ATA1_SYNY31.757e-3543.35Cation-transporting ATPase pma1 OS=Synechocystis s... [more]
AT1A1_CATCO5.652e-3441.88Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A3_RAT9.641e-3441.36Sodium/potassium-transporting ATPase subunit alpha... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_D07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938862 ID=CK938862; Name=CK938862; organism=Citrus sinensis; type=EST; length=845bp
GGGGGGCTGAACCAAGGCACAAGCAAGAGATAGTGAGACTGCTTAAAGAA
GATGGGGAGGTAGTTGCCATGACTGGCGATGGAGTAAATGATGCTCCTGC
TCTGAAACTGGCTGATATTGGAATTGCCATGGGGATTGCTGGAACCGAGG
TTGCAAAGGAAGCTTCCGACATGGTATTGGCAGATGATGATTTTAGTACC
ATTGTTTCTGCTGTTGGTGAGGGCAGATCCATTTACAACAACATGAAGGC
TTTTATCAGGTACATGATATCTTCAAACATCGGTGAGGTCGCCTCTATAT
TCTTTACAGCAGCTTTAGGTATACCTGAAGGCCTGATACCTGTCCAGCTT
CTGTGGGTCAATCTTGTTACGGATGGACCTCCTGCAACAGCATTGGGATT
CAATCCTCCAGATAAAGACATAATGAAGAAACCCCCTCGTCGGAGTGATG
ACTCTCTAATTTCTGCTTGGATTTTATTCCGCTATCTGGTTATCGGGCTG
TATGTTGGAATAGCAACGGTTGGTGTTTTCATCATTTGGTATACACATGG
TTCTTTCTTGGGCACCAATCTCATTGGCGACGGTCACAGCCTTGTCACAT
ACTCCCAGCTCACTAACTGGGGCCAGTGCCCATCCTGGGGGAATTTTACC
GTTTCTCCCTTCACAGCTGGTAATCAGGTTTTCACATTCAATGATAACCC
TTGTGATTATTTCCATGGCGGCAAAGTAAAAGCAATGACACTTTCTCTTT
CTGTGCTGGTCGCCATTGAAATGTTTAACTCCCTCAATGCCCTCTCTGAG
GATGGAAGCCTATTGACAATGCCCCCATGGGNNNACCCTTGGCTC
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