CK938862

Overview
NameCK938862
Unique NameCK938862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT1A3_CHICK (Sodium/potassium-transporting ATPase subunit alpha-3 OS=Gallus gallus GN=ATP1A3 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.162e-33
Identity = 78/191 (40.84%), Postives = 115/191 (60.21%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPR--RSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGTNLIG 578
            P+ K  IV   +  G +VA+TGDGVND+PALK ADIG+AMGI G++V+K+A+DM+L DD+F++IV+ V EGR I++N+K  I Y ++SNI E+          IP  L  + +L ++L TD  PA +L +   + DIMK+ PR  RSD  +    I   Y  IG+   +     + +      FL + L+G
Sbjct:  682 PQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIRGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIMANIPLPLGTITILCIDLGTDMVPAISLAYEAAESDIMKRQPRNPRSDKLVNERLISMAYGQIGMIQALGGFFSYFVILAENGFLPSCLVG 872          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT1A1_CHICK (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Gallus gallus GN=ATP1A1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.162e-33
Identity = 77/191 (40.31%), Postives = 115/191 (60.21%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPR--RSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGTNLIG 578
            P+ K  IV   +  G +VA+TGDGVND+PALK ADIG+AMGIAG++V+K+A+DM+L DD+F++IV+ V EGR I++N+K  I Y ++SNI E+          IP  L    +L ++L TD  PA +L +   + DIMK+ PR  ++D  +    I   Y  IG+   +     + +      FL + L+G
Sbjct:  693 PQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTCTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVIMAENGFLPSGLVG 883          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT1A1_RAT (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Rattus norvegicus GN=Atp1a1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.392e-32
Identity = 77/191 (40.31%), Postives = 115/191 (60.21%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPR--RSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGTNLIG 578
            P+ K  IV   +  G +VA+TGDGVND+PALK ADIG+AMGI G++V+K+A+DM+L DD+F++IV+ V EGR I++N+K  I Y ++SNI E+          IP  L  V +L ++L TD  PA +L +   + DIMK+ PR  ++D  +    I   Y  IG+   +     + +      FL  +L+G
Sbjct:  695 PQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIVGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFLPFHLLG 885          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT1A1_MOUSE (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Mus musculus GN=Atp1a1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.392e-32
Identity = 77/191 (40.31%), Postives = 115/191 (60.21%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPR--RSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGTNLIG 578
            P+ K  IV   +  G +VA+TGDGVND+PALK ADIG+AMGI G++V+K+A+DM+L DD+F++IV+ V EGR I++N+K  I Y ++SNI E+          IP  L  V +L ++L TD  PA +L +   + DIMK+ PR  ++D  +    I   Y  IG+   +     + +      FL  +L+G
Sbjct:  695 PQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIVGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFLPFHLLG 885          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT12A_BUFMA (Potassium-transporting ATPase alpha chain 2 OS=Bufo marinus GN=ATP12A PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.392e-32
Identity = 80/194 (41.24%), Postives = 122/194 (62.89%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSD-DSLISAWI-LFRYLVIGLYVGIATVGVFIIWYT---HGSFLGTNLIG 578
            P+ K  IV   +    VVA+TGDGVND+PALK ADIGIAMGIAG++ AK A+DM+L DD+F++IV+ V EGR I++N+K  I Y ++ N+ E+          IP  +  + +L+++L TD  P+ +  +   ++DIM + PRR + D L++  + L+ YL IG+   I +VG F+ ++T      FL   L+G
Sbjct:  713 PQQKLIIVEGCQRQNYVVAVTGDGVNDSPALKKADIGIAMGIAGSDAAKNAADMILLDDNFASIVTGVEEGRLIFDNIKKSIGYTLTKNVAELCPFLIYIIADIPLPIGTITILFIDLGTDIIPSVSFAYEKAERDIMNRKPRRKNVDRLVNQQLALYAYLQIGI---IQSVGAFLNYFTVMAEQGFLPHTLVG 903          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT1B_ARTSF (Sodium/potassium-transporting ATPase subunit alpha-B OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.818e-32
Identity = 80/191 (41.88%), Postives = 116/191 (60.73%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRR--SDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGTNLIG 578
            P+ K  IV   +  G +VA+TGDGVND+PALK ADIG+AMGIAG++V+K+A+DM+L DD+F++IV+ V EGR I++N+K  I Y ++SNI E++         IP  L  V +L ++L TD  PA +L +   + DIMK+ PR   +D  +    I   Y  IG+    A   V+ +      FL  +L G
Sbjct:  676 PQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIVYTLTSNIPEISPFLLFILFDIPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRRPRNPVTDKLVNERLISLAYGQIGMIQASAGFFVYFVIMAECGFLPWDLFG 866          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT1A1_PIG (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Sus scrofa GN=ATP1A1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.818e-32
Identity = 77/191 (40.31%), Postives = 115/191 (60.21%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPR--RSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGTNLIG 578
            P+ K  IV   +  G +VA+TGDGVND+PA K ADIG+AMGIAG++V+K+A+DM+L DD+F++IV+ V EGR I++N+K  I Y ++SNI E+          IP  L  V +L ++L TD  PA +L +   + DIMK+ PR  ++D  +    I   Y  IG+   +     + +      FL  +L+G
Sbjct:  693 PQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNEQLISMAYGQIGMIQALGGFFTYFVILAENGFLPIHLLG 883          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ATC2_YEAST (Calcium-transporting ATPase 2 OS=Saccharomyces cerevisiae GN=PMC1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.101e-32
Identity = 76/155 (49.03%), Postives = 102/155 (65.81%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEG--LIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLIS 464
            + P  K+ +V  LK  G+VVA+TGDG NDAPALKLAD+G +MGI+GTEVA+EASD++L  DDFS IV+A+  GR +  ++K FI++ +  NI  V   F ++     E   L  VQLLW+NL+ D   A AL  + PD +IM + PR    SLIS
Sbjct:  817 SSPEDKRLLVETLKGMGDVVAVTGDGTNDAPALKLADVGFSMGISGTEVAREASDIILMTDDFSAIVNAIKWGRCVSVSIKKFIQFQLIVNITAVILTFVSSVASSDETSVLTAVQLLWINLIMDTLAALALATDKPDPNIMDRKPRGRSTSLIS 971          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: ACA8_ARATH (Calcium-transporting ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=ACA8 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.101e-32
Identity = 84/199 (42.21%), Postives = 122/199 (61.31%), Query Frame = 3
Query:    6 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIP---VQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGTNLIGDGHSL 593
            + P  K  +V+ L+  G VVA+TGDG NDAPAL  ADIG+AMGIAGTEVAKE+SD+++ DD+F+++V  V  GRS+Y N++ FI++ ++ N   VA++       I  G +P   VQLLWVNL+ D   A AL   PP   +M +PP    + LI+  I++R L+I     I  V V +      +F G +++G  H +
Sbjct:  761 SSPNDKLLLVQSLRRQGHVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVN---VAALVINVVAAISSGDVPLTAVQLLWVNLIMDTLGALALATEPPTDHLMGRPPVGRKEPLITN-IMWRNLLI---QAIYQVSVLLTL----NFRGISILGLEHEV 948          
BLAST of CK938862 vs. ExPASy Swiss-Prot
Match: AT1A3_OREMO (Sodium/potassium-transporting ATPase subunit alpha-3 OS=Oreochromis mossambicus GN=atp1a3 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.051e-32
Identity = 76/191 (39.79%), Postives = 118/191 (61.78%), Query Frame = 3
Query:   12 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRR-SDDSLISAWIL-FRYLVIGLYVGIATVGVFIIWYTHGSFLGTNLIG 578
            P+ K  IV   +  G +VA+TGDGVND+PALK ADIG+AMGI+G++V+K+A+DM+L DD+F++IV+ V EGR I++N+K  I Y ++SNI E+    F   + IP  L  + +L ++L TD   A +L +   + DIMK+ PR    D L++  ++   Y  IG+   +     + +      FL + L+G
Sbjct:  682 PQQKLIIVEGCQRLGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLFFIIVNIPLALGTITILCIDLGTDMGSAISLAYETAESDIMKRQPRNPCRDKLVNERLISIAYGQIGMIQALGGFFSYFVILAENGFLPSQLVG 872          
The following BLAST results are available for this feature:
BLAST of CK938862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
AT1A3_CHICK8.162e-3340.84Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_CHICK8.162e-3340.31Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_RAT1.392e-3240.31Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_MOUSE1.392e-3240.31Sodium/potassium-transporting ATPase subunit alpha... [more]
AT12A_BUFMA1.392e-3241.24Potassium-transporting ATPase alpha chain 2 OS=Buf... [more]
AT1B_ARTSF1.818e-3241.88Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_PIG1.818e-3240.31Sodium/potassium-transporting ATPase subunit alpha... [more]
ATC2_YEAST3.101e-3249.03Calcium-transporting ATPase 2 OS=Saccharomyces cer... [more]
ACA8_ARATH3.101e-3242.21Calcium-transporting ATPase 8, plasma membrane-typ... [more]
AT1A3_OREMO4.051e-3239.79Sodium/potassium-transporting ATPase subunit alpha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004437_D07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938862 ID=CK938862; Name=CK938862; organism=Citrus sinensis; type=EST; length=845bp
GGGGGGCTGAACCAAGGCACAAGCAAGAGATAGTGAGACTGCTTAAAGAA
GATGGGGAGGTAGTTGCCATGACTGGCGATGGAGTAAATGATGCTCCTGC
TCTGAAACTGGCTGATATTGGAATTGCCATGGGGATTGCTGGAACCGAGG
TTGCAAAGGAAGCTTCCGACATGGTATTGGCAGATGATGATTTTAGTACC
ATTGTTTCTGCTGTTGGTGAGGGCAGATCCATTTACAACAACATGAAGGC
TTTTATCAGGTACATGATATCTTCAAACATCGGTGAGGTCGCCTCTATAT
TCTTTACAGCAGCTTTAGGTATACCTGAAGGCCTGATACCTGTCCAGCTT
CTGTGGGTCAATCTTGTTACGGATGGACCTCCTGCAACAGCATTGGGATT
CAATCCTCCAGATAAAGACATAATGAAGAAACCCCCTCGTCGGAGTGATG
ACTCTCTAATTTCTGCTTGGATTTTATTCCGCTATCTGGTTATCGGGCTG
TATGTTGGAATAGCAACGGTTGGTGTTTTCATCATTTGGTATACACATGG
TTCTTTCTTGGGCACCAATCTCATTGGCGACGGTCACAGCCTTGTCACAT
ACTCCCAGCTCACTAACTGGGGCCAGTGCCCATCCTGGGGGAATTTTACC
GTTTCTCCCTTCACAGCTGGTAATCAGGTTTTCACATTCAATGATAACCC
TTGTGATTATTTCCATGGCGGCAAAGTAAAAGCAATGACACTTTCTCTTT
CTGTGCTGGTCGCCATTGAAATGTTTAACTCCCTCAATGCCCTCTCTGAG
GATGGAAGCCTATTGACAATGCCCCCATGGGNNNACCCTTGGCTC
back to top