EY649579 | Citrus Genome Database

Overview


Name	EY649579
Unique Name	EY649579
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	827

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7838	contig	Csv1_Contig7838:430..1253.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.017e-96
Identity = 114/130 (87.69%), Postives = 118/130 (90.77%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L SQVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS AEITNSAFEP+SMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 136.346 bits (342), Expect = 1.017e-96
Identity = 70/92 (76.09%), Postives = 74/92 (80.43%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L ++AV  X          ERL  DYGKKSKLGFTVYPSPQVSTSV EPYNSVLSTHSLLEHTDV+ LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFHAVGGXTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 1.017e-96
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

HSP 4 Score: 21.9422 bits (45), Expect = 1.017e-96
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA_DAUCA (Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.017e-96
Identity = 113/129 (87.60%), Postives = 116/129 (89.92%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQ 745
            L SQVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS AEITNSAFEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAV TI T R IQ +DWCPTGFKCGINYQ
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQ 358

HSP 2 Score: 137.887 bits (346), Expect = 1.017e-96
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQ+STSV EPYNSVLSTHSLLEHTDV+ LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQISTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICKRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 1.017e-96
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

HSP 4 Score: 23.483 bits (49), Expect = 1.017e-96
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1

Query:  745 APTVVPRGDLA 777
            APTVVP GDLA
Sbjct:  359 APTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA2_HORVU (Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.409e-96
Identity = 114/130 (87.69%), Postives = 117/130 (90.00%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L SQVI SLTASL+ DGALNVDV EF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS AEITNSAFEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 137.887 bits (346), Expect = 2.409e-96
Identity = 70/92 (76.09%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVSTSV EPYNSVLSTHSLLEHTDV+ LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 26.1794 bits (56), Expect = 2.409e-96
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++L+DNCTGLQG   F
Sbjct:  123 RKLSDNCTGLQGFLVF 138

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA_WHEAT (Tubulin alpha chain OS=Triticum aestivum GN=TUBA PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 5.332e-96
Identity = 114/130 (87.69%), Postives = 117/130 (90.00%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L SQVI SLTASL+ DGALNVDV EF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS AEITNSAFEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 136.732 bits (343), Expect = 5.332e-96
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYG+KSKLGFTVYPSPQVSTSV EPYNSVLSTHSLLEHTDV+ LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGRKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 26.1794 bits (56), Expect = 5.332e-96
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++L+DNCTGLQG   F
Sbjct:  123 RKLSDNCTGLQGFLVF 138

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.393e-96
Identity = 111/128 (86.72%), Postives = 117/128 (91.41%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            +QVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFMLSSY+PVISA+KAYHEQLS AEITNSAFEP+SMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  232 AQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYSPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 135.961 bits (341), Expect = 8.393e-96
Identity = 67/92 (72.83%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVST+V EPYNSVLSTHSLLEHTDV+ +LD+EA+YDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVSVMLDNEAVYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 8.393e-96
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

HSP 4 Score: 21.9422 bits (45), Expect = 8.393e-96
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA6_ARATH (Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.093e-95
Identity = 112/130 (86.15%), Postives = 117/130 (90.00%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L SQVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFMLSSYAPVISA+KA+HEQLS AEITNSAFEP+SMMAKCDPRHGKYMA CLMYRGDV P DVNAAV TI T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 135.961 bits (341), Expect = 1.093e-95
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVSTSV EPYNSVLSTHSLLEHTDV+ LLD+EAIYDIC RSL+IERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 1.093e-95
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

HSP 4 Score: 21.9422 bits (45), Expect = 1.093e-95
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA1_VOLCA (Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.093e-95
Identity = 109/128 (85.16%), Postives = 116/128 (90.62%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            +QVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFMLSSYAP+ISA+KAYHEQLS AEITN+AFEP+SMM KCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  232 AQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 137.502 bits (345), Expect = 1.093e-95
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVST+V EPYNSVLSTHSLLEHTDVA +LD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 1.093e-95
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

HSP 4 Score: 21.9422 bits (45), Expect = 1.093e-95
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.423e-95
Identity = 112/130 (86.15%), Postives = 117/130 (90.00%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L SQVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFMLSSYAPVISA+KA+HEQLS AEITNSAFEP+SMMAKCDPRHGKYMA CLMYRGDV P DVNAAV TI T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 135.576 bits (340), Expect = 1.423e-95
Identity = 69/92 (75.00%), Postives = 72/92 (78.26%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVSTSV EPYNSVLSTHSLLEHTDV+ LLD+EAIYDIC RSL IERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 1.423e-95
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

HSP 4 Score: 21.9422 bits (45), Expect = 1.423e-95
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA1_CHLRE (Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 3.139e-95
Identity = 107/128 (83.59%), Postives = 116/128 (90.62%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            +QVI SLTASL+ DGALNVD+TEF TNLVPYPRIHFMLSSYAP+ISA+KAYHEQLS AEITN+AFEP+SMM KCDPRHGKYMA CLMYRGDV P DVNA+VATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  232 AQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPRHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 137.502 bits (345), Expect = 3.139e-95
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVST+V EPYNSVLSTHSLLEHTDVA +LD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 3.139e-95
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

HSP 4 Score: 21.9422 bits (45), Expect = 3.139e-95
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.086e-95
Identity = 112/128 (87.50%), Postives = 117/128 (91.41%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            +QVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS AEITNSAFEP+SMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  232 AQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 134.806 bits (338), Expect = 4.086e-95
Identity = 66/92 (71.74%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +N+V             ERL  DYGKKSKLGFTVYPSPQVST+V EPYNSVLSTHSLLEHTDVA +LD+EA+YDIC R+LDIERPTYTNL
Sbjct:  136 LVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNL 227

HSP 3 Score: 25.0238 bits (53), Expect = 4.086e-95
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LAD CTGLQG   F
Sbjct:  123 RKLADQCTGLQGFLVF 138

HSP 4 Score: 21.9422 bits (45), Expect = 4.086e-95
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

The following BLAST results are available for this feature:

BLAST of EY649579 vs. ExPASy Swiss-Prot

BLAST of EY649579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399


Match Name	E-value	Identity	Description
TBA1_ANEPH	1.017e-96	87.69	Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUB...	[more]
TBA_DAUCA	1.017e-96	87.60	Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 S...	[more]
TBA2_HORVU	2.409e-96	87.69	Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 ...	[more]
TBA_WHEAT	5.332e-96	87.69	Tubulin alpha chain OS=Triticum aestivum GN=TUBA P...	[more]
TBA_CHLVU	8.393e-96	86.72	Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA ...	[more]
TBA6_ARATH	1.093e-95	86.15	Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=T...	[more]
TBA1_VOLCA	1.093e-95	85.16	Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN...	[more]
TBA2_ARATH	1.423e-95	86.15	Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali...	[more]
TBA1_CHLRE	3.139e-95	83.59	Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii...	[more]
TBA_OXYGR	4.086e-95	87.50	Tubulin alpha chain OS=Oxytricha granulifera PE=3 ...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-100-001-B11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY649579 ID=EY649579; Name=EY649579; organism=Citrus sinensis; type=EST; length=827bp
CCACGCGTCCGGTTGATCTCTGCCTTGACCGCATCAGGAGCTGGCTGATA
ACTGCACTGGTCTCCAGGGCATTCCTTGTTTTACAATGCTGTTGGTGGAG
GAACTGGCTCTGGTCTTGGGTCTCTTCTTCTGGAGAGGTTGCCTGCTGAC
TATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCTACCCATCTCCTCAGGT
CTCCACTTCTGTTGCTGAGCCTTACAACAGTGTCCTCTCAACCCACTCCC
TGTTGGAGCATACTGATGTGGCTGCTCTTCTCGACAGTGAGGCCATTTAT
GACATCTGCTGGCGCTCCCTTGACATTGAACGTCCTACCTATACTAACCT
CATATATACTTGGTTCTCAGGTCATTCCTTCATTGACTGCCTCACTGAAG
CCTGATGGCGCTTTGAATGTGGATGTGACTGAATTCCCAACCAACTTGGT
CCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTCATCT
CAGCTGATAAAGCCTACCATGAACAACTCTCAGGTGCTGAGATCACCAAC
AGTGCCTTCGAGCCCTCATCTATGATGGCCAAATGTGATCCTCGGCATGG
CAAGTACATGGCTCGCTGCCTCATGTACCGAGGTGATGTTGAGCCCAACG
ATGTCAATGCAGCTGTTGCTACCATCAACACCAACCGTCTCATCCAATTA
CTGGACTGGTGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGCCCCA
ACTGTGGTTCCTCGTGGAGACCTTGCCACGTGCAAAGGGCTGATTGCATG
ATCTACACTCCCCCATGTGCATGAGTG