EY649579 | Citrus Genome Database

Overview


Name	EY649579
Unique Name	EY649579
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	827

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7838	contig	Csv1_Contig7838:430..1253.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 7.533e-95
Identity = 107/128 (83.59%), Postives = 114/128 (89.06%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            SQ+I SLT SL+ DGA+NVDVTEF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS  EITN+ FEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R +Q +DWCPTGFKCGINYQP
Sbjct:  232 SQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 137.887 bits (346), Expect = 7.533e-95
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFT+YPSPQVST+V EPYNSVLSTHSLLEHTDVA LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 7.533e-95
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 7.533e-95
Identity = 107/128 (83.59%), Postives = 114/128 (89.06%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            SQ+I SLT SL+ DGA+NVDVTEF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS  EITN+ FEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R +Q +DWCPTGFKCGINYQP
Sbjct:  232 SQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 137.887 bits (346), Expect = 7.533e-95
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFT+YPSPQVST+V EPYNSVLSTHSLLEHTDVA LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 7.533e-95
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 7.533e-95
Identity = 107/128 (83.59%), Postives = 114/128 (89.06%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            SQ+I SLT SL+ DGA+NVDVTEF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS  EITN+ FEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R +Q +DWCPTGFKCGINYQP
Sbjct:  232 SQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 137.887 bits (346), Expect = 7.533e-95
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFT+YPSPQVST+V EPYNSVLSTHSLLEHTDVA LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 7.533e-95
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 7.533e-95
Identity = 107/128 (83.59%), Postives = 114/128 (89.06%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            SQ+I SLT SL+ DGA+NVDVTEF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS  EITN+ FEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R +Q +DWCPTGFKCGINYQP
Sbjct:  232 SQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 137.887 bits (346), Expect = 7.533e-95
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFT+YPSPQVST+V EPYNSVLSTHSLLEHTDVA LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 7.533e-95
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 7.533e-95
Identity = 107/128 (83.59%), Postives = 114/128 (89.06%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            SQ+I SLT SL+ DGA+NVDVTEF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS  EITN+ FEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R +Q +DWCPTGFKCGINYQP
Sbjct:  232 SQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 137.887 bits (346), Expect = 7.533e-95
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFT+YPSPQVST+V EPYNSVLSTHSLLEHTDVA LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 7.533e-95
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA_EUGGR (Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.078e-94
Identity = 107/128 (83.59%), Postives = 117/128 (91.41%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            +QVI SLTASL+ DGALNVD+TEF TNLVPYPRIHF+LSSYAP+ISA+KAYHEQLS AEITN+AFEP+SMMAKCDPRHGKYMA CLMYRGDV P DVNA+VATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  232 AQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFVLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 133.265 bits (334), Expect = 1.078e-94
Identity = 65/92 (70.65%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L ++AV             ERL  DYGKKSKLGFT+YPSPQ+ST+V EPYNSVLSTHSLLEHTDVA +LD+EAIYDIC R+LDIERPTYTNL
Sbjct:  136 LAFHAVGGGTGSGLGRLLLERLSVDYGKKSKLGFTIYPSPQISTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNL 227

HSP 3 Score: 27.7202 bits (60), Expect = 1.078e-94
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLAF 138

HSP 4 Score: 22.7126 bits (47), Expect = 1.078e-94
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 3

Query:   12 VDLCLDRIR 38
            VDLCLDRIR
Sbjct:  115 VDLCLDRIR 123

HSP 5 Score: 21.9422 bits (45), Expect = 1.078e-94
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA2_CHLRE (Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.690e-94
Identity = 106/128 (82.81%), Postives = 115/128 (89.84%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            +QVI SLTASL+ DGALNVD+TEF TNLVPYPRIHFMLSSYAP+ISA+KAYHEQLS AEITN+AFEP+SMM KCDP HGKYMA CLMYRGDV P DVNA+VATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  232 AQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPLHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 137.502 bits (345), Expect = 3.690e-94
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVST+V EPYNSVLSTHSLLEHTDVA +LD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 3.690e-94
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 9.683e-94
Identity = 104/128 (81.25%), Postives = 112/128 (87.50%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            SQ+I SLT SL+ DGA+NVD+TEF TNLVPYPRIHFMLSSYAPVISA KAYHEQLS  EITN+ FEP+SMMAKCDPRHGKYMA CLMYRGDV P DVNAAV TI T R +Q +DWCPTGFKCGINYQP
Sbjct:  232 SQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 137.887 bits (346), Expect = 9.683e-94
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFT+YPSPQVST+V EPYNSVLSTHSLLEHTDVA LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 9.683e-94
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

HSP 4 Score: 21.9422 bits (45), Expect = 9.683e-94
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 3.620e-93
Identity = 110/128 (85.94%), Postives = 115/128 (89.84%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            +QVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFML SYAPVISA+KAYHEQLS AEITNSAFEP+SMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DW PTGFKCGINYQP
Sbjct:  232 AQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLCSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQP 359

HSP 2 Score: 131.339 bits (329), Expect = 3.620e-93
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1

Query:  133 ERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            ERL  DYGKKSKLGFTVYPSPQV+T+V EPYNSVLSTH+LLEHTDVA +LD+EAIYDIC RSLDI+RPTYTNL
Sbjct:  155 ERLSVDYGKKSKLGFTVYPSPQVATAVVEPYNSVLSTHALLEHTDVAVMLDNEAIYDICRRSLDIQRPTYTNL 227

HSP 3 Score: 27.7202 bits (60), Expect = 3.620e-93
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCFT 85
            ++LADNCTGLQG   F+
Sbjct:  123 RKLADNCTGLQGFLVFS 139

HSP 4 Score: 21.9422 bits (45), Expect = 3.620e-93
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 3.620e-93
Identity = 110/128 (85.94%), Postives = 115/128 (89.84%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            +QVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFML SYAPVISA+KAYHEQLS AEITNSAFEP+SMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DW PTGFKCGINYQP
Sbjct:  232 AQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLCSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQP 359

HSP 2 Score: 131.339 bits (329), Expect = 3.620e-93
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1

Query:  133 ERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            ERL  DYGKKSKLGFTVYPSPQV+T+V EPYNSVLSTH+LLEHTDVA +LD+EAIYDIC RSLDI+RPTYTNL
Sbjct:  155 ERLSVDYGKKSKLGFTVYPSPQVATAVVEPYNSVLSTHALLEHTDVAVMLDNEAIYDICRRSLDIQRPTYTNL 227

HSP 3 Score: 27.7202 bits (60), Expect = 3.620e-93
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCFT 85
            ++LADNCTGLQG   F+
Sbjct:  123 RKLADNCTGLQGFLVFS 139

HSP 4 Score: 21.9422 bits (45), Expect = 3.620e-93
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

The following BLAST results are available for this feature:

BLAST of EY649579 vs. ExPASy Swiss-Prot

BLAST of EY649579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399


Match Name	E-value	Identity	Description
TBA6_MAIZE	7.533e-95	83.59	Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV...	[more]
TBA5_MAIZE	7.533e-95	83.59	Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV...	[more]
TBA3_ELEIN	7.533e-95	83.59	Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ...	[more]
TBA1_ORYSJ	7.533e-95	83.59	Tubulin alpha-1 chain OS=Oryza sativa subsp. japon...	[more]
TBA1_HORVU	7.533e-95	83.59	Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ...	[more]
TBA_EUGGR	1.078e-94	83.59	Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE...	[more]
TBA2_CHLRE	3.690e-94	82.81	Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii...	[more]
TBA3_ARATH	9.683e-94	81.25	Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali...	[more]
TBA1_NAEGR	3.620e-93	85.94	Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=...	[more]
TBA13_NAEGR	3.620e-93	85.94	Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-001-B11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY649579 ID=EY649579; Name=EY649579; organism=Citrus sinensis; type=EST; length=827bp
CCACGCGTCCGGTTGATCTCTGCCTTGACCGCATCAGGAGCTGGCTGATA
ACTGCACTGGTCTCCAGGGCATTCCTTGTTTTACAATGCTGTTGGTGGAG
GAACTGGCTCTGGTCTTGGGTCTCTTCTTCTGGAGAGGTTGCCTGCTGAC
TATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCTACCCATCTCCTCAGGT
CTCCACTTCTGTTGCTGAGCCTTACAACAGTGTCCTCTCAACCCACTCCC
TGTTGGAGCATACTGATGTGGCTGCTCTTCTCGACAGTGAGGCCATTTAT
GACATCTGCTGGCGCTCCCTTGACATTGAACGTCCTACCTATACTAACCT
CATATATACTTGGTTCTCAGGTCATTCCTTCATTGACTGCCTCACTGAAG
CCTGATGGCGCTTTGAATGTGGATGTGACTGAATTCCCAACCAACTTGGT
CCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTCATCT
CAGCTGATAAAGCCTACCATGAACAACTCTCAGGTGCTGAGATCACCAAC
AGTGCCTTCGAGCCCTCATCTATGATGGCCAAATGTGATCCTCGGCATGG
CAAGTACATGGCTCGCTGCCTCATGTACCGAGGTGATGTTGAGCCCAACG
ATGTCAATGCAGCTGTTGCTACCATCAACACCAACCGTCTCATCCAATTA
CTGGACTGGTGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGCCCCA
ACTGTGGTTCCTCGTGGAGACCTTGCCACGTGCAAAGGGCTGATTGCATG
ATCTACACTCCCCCATGTGCATGAGTG