EY649579

Overview
NameEY649579
Unique NameEY649579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 1.131e-13
Identity = 31/127 (24.41%), Postives = 65/127 (51.18%), Query Frame = 2
Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYH--EQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGIN 739
            S V+ + T +L+  G +N D+     +LVP PR HF+++ Y P +S D+ ++   + +  ++     +  ++M     + G YM+   + +GDV+P  V+ ++  I   +L   + W P   +  ++
Sbjct:  230 STVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTP-LSLDQKFNSVRKTTVLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALS 355          

HSP 2 Score: 38.891 bits (89), Expect = 1.131e-13
Identity = 24/73 (32.88%), Postives = 38/73 (52.05%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            ERL   Y KK    ++V+P    +  V +PYN +LS   L  + D   +LD+ A+  I    L I +PT++ +
Sbjct:  155 ERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQI 225          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.470e-13
Identity = 27/122 (22.13%), Postives = 61/122 (50.00%), Query Frame = 2
Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPV-ISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFK 727
            S V+ + T +L+  G++N D+    ++L+  P+ HF+++SY P+ I    +  ++ +  ++        ++M     R G Y++   + RG+ +P  V+  +  I   +L+  + W P   +
Sbjct:  234 SNVMSASTTTLRYPGSMNNDMISLISSLIINPKCHFLITSYTPITIDKHISNVQKTTVLDVMKRLLHTKNIMVSAPVRRGMYISILNIIRGETDPTQVHKGLQRIRDRKLVNFIKWNPASIQ 355          

HSP 2 Score: 40.817 bits (94), Expect = 1.470e-13
Identity = 26/78 (33.33%), Postives = 42/78 (53.85%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYP--SPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTY--TNLI 354
            E L  +Y KK    F+V+P  + + S  V +PYNS+L+   L+  TD   ++D+ ++  I    L +  PT+  TN I
Sbjct:  155 ELLNDNYSKKMIQTFSVFPLLTNESSDVVVQPYNSILTLKRLILSTDSVVVIDNTSLNRIFVERLKLNNPTFQQTNTI 232          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 1.907e-13
Identity = 33/136 (24.26%), Postives = 63/136 (46.32%), Query Frame = 2
Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYH----EQLSGAEITNSAFEPSS---MMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQ 745
            L S V+ + T +L+  G +N D+     +L+P PR HF+ +SY P  ++DK        + +  ++     +P +    M     RH  Y++   + +G+V+P DV+ ++  I        + W P   +  +  Q
Sbjct:  230 LVSTVMSASTQTLRYPGYMNNDLVGMIASLIPTPRCHFLTTSYTP-FTSDKIEQAKAVRKTTVLDVMRRLLQPKNRLVSMPTTPSRHACYISILNIIQGEVDPTDVHKSLLRIRERNSATFIPWGPASIQVALTKQ 364          

HSP 2 Score: 44.669 bits (104), Expect = 1.907e-13
Identity = 23/66 (34.85%), Postives = 34/66 (51.52%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIE 330
            ER+   Y KK    ++V+P       V +PYNS+LS   L  H D   +LD+ A+  IC   L ++
Sbjct:  155 ERMNDRYPKKLIQTYSVFPDADSGDVVVQPYNSLLSMKRLTNHADSVIVLDNAALSKICQDRLHVQ 220          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.908e-13
Identity = 32/126 (25.40%), Postives = 63/126 (50.00%), Query Frame = 2
Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYH--EQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGI 736
            S V+ + T +L+  G +N D+     +LVP PR HF+++ Y P +S D+ Y    + +  ++     +  ++M     + G YM+   + +GDV+P  V+ ++  I   +L   + W P   +  +
Sbjct:  230 STVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTP-LSLDQKYTSVRKTTFLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIKERKLANFIPWGPASIQVAL 354          

HSP 2 Score: 38.1206 bits (87), Expect = 1.908e-13
Identity = 23/73 (31.51%), Postives = 38/73 (52.05%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            ER+   Y KK    ++V+P    +  V +PYN +LS   L  + D   +LD+ A+  I    L I +PT++ +
Sbjct:  155 ERINDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQI 225          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.478e-13
Identity = 31/127 (24.41%), Postives = 64/127 (50.39%), Query Frame = 2
Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYH--EQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGIN 739
            S V+ + T +L+  G +N D+     +LVP PR HF+++ Y P +S D+ +    + +  ++     +  ++M     + G YM+   + +GDV+P  V+ ++  I   +L   + W P   +  ++
Sbjct:  230 STVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTP-LSLDQKFTSVRKTTVLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALS 355          

HSP 2 Score: 38.891 bits (89), Expect = 2.478e-13
Identity = 24/73 (32.88%), Postives = 38/73 (52.05%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            ERL   Y KK    ++V+P    +  V +PYN +LS   L  + D   +LD+ A+  I    L I +PT++ +
Sbjct:  155 ERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQI 225          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 2.479e-13
Identity = 32/130 (24.62%), Postives = 65/130 (50.00%), Query Frame = 2
Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVI--SADKAYH-EQLSGAEITNSAFEPSSMMAKCDP-RHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGI 736
            L S V+ + T +L+  G ++ D+     +L+P PR HF+L+SY P    + D+A    + +  ++     +P + M   +P +   Y++   + +G+ +P DV+ ++  I   RL   + W P   +  +
Sbjct:  230 LVSTVMSASTTTLRYPGYMHNDLVGIIASLIPTPRSHFLLTSYTPFTGDNIDQAKTVRKTTVLDVMRRLLQPKNRMVSINPSKSSCYISILNIIQGEADPTDVHKSLLRIRERRLASFIPWGPASIQVAL 359          

HSP 2 Score: 42.743 bits (99), Expect = 2.479e-13
Identity = 21/70 (30.00%), Postives = 38/70 (54.29%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTY 342
            ER+   + KK    ++V+P  Q +  V  PYNS+L+   L ++ D   +LD+ A+  I    L ++ P++
Sbjct:  155 ERMNDRFPKKLIQTYSVFPDTQAADVVVNPYNSLLAMRRLTQNADSVVVLDNAALSRIVADRLHVQEPSF 224          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.484e-13
Identity = 33/150 (22.00%), Postives = 70/150 (46.67%), Query Frame = 2
Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPV-ISADKAYHEQLSGAEITNSAFEPSSMMAKCDPR-----HGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQPQLWFLVETLPRAKG 790
            L S V+ + T +L+  G +N D+     +L+P PR HF+++ Y P+ +        + +  ++     +  ++M     R       KY++   + +G+V+P  V+ ++  I   +L+  +DW P   +  ++ +      V+T  R  G
Sbjct:  183 LVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWAPASIQVALSRKSP---YVQTTHRVSG 329          

HSP 2 Score: 41.2022 bits (95), Expect = 2.484e-13
Identity = 26/72 (36.11%), Postives = 39/72 (54.17%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYPSPQVSTS--VAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTY 342
            E L   Y KK    ++V+P+ QV TS  V +PYNS+L+   L  + D   +LD+ A+  I    L +  PT+
Sbjct:  107 ETLNDRYSKKLVQTYSVFPN-QVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTF 177          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 5.427e-13
Identity = 33/150 (22.00%), Postives = 70/150 (46.67%), Query Frame = 2
Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPV-ISADKAYHEQLSGAEITNSAFEPSSMMAKCDPR-----HGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQPQLWFLVETLPRAKG 790
            L S V+ + T +L+  G +N D+     +L+P PR HF+++ Y P+ +        + +  ++     +  ++M     R       KY++   + +G+V+P  V+ ++  I   +L+  +DW P   +  ++ +      V+T  R  G
Sbjct:  231 LVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNVMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWAPASIQVALSRKSP---YVQTTHRVSG 377          

HSP 2 Score: 40.0466 bits (92), Expect = 5.427e-13
Identity = 23/71 (32.39%), Postives = 37/71 (52.11%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYPSP-QVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTY 342
            E L   Y KK    ++V+P+  + S  V +PYNS+L+   L  + D   +LD+ A+  I    L +  PT+
Sbjct:  155 ETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTF 225          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.136e-13
Identity = 42/157 (26.75%), Postives = 84/157 (53.50%), Query Frame = 2
Query:  275 LFSTVRP---FMTSAGAPLTLNVLPILTSYILGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGI 736
            L +TV+P     +S+GA    +  P      + + ++ +LT+S + +G+LN+D+ E   NLVP+P++H+++SS  P+ +            ++ + AF     + + DP+H  Y+A  LM RG+V+ +D+   +  +  +  +Q + W   G+K  +
Sbjct:  230 LGTTVKPKSLVTSSSGALKKQHKKPFDAMNNIVANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLTDVNIPPRRLDQMFSDAFSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKPS--LQFVSWNQEGWKTSL 384          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.188e-12
Identity = 29/133 (21.80%), Postives = 65/133 (48.87%), Query Frame = 2
Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPV-ISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRH-----GKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGIN 739
            L S V+ + T +L+  G +N D+     +L+P PR HF+++ Y P+ +        + +  ++     +  ++M     R+      KY++   + +G+V+P  V+ ++  I   +L+  +DW P   +  ++
Sbjct:  231 LVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALS 363          

HSP 2 Score: 39.6614 bits (91), Expect = 1.188e-12
Identity = 23/71 (32.39%), Postives = 37/71 (52.11%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYPSP-QVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTY 342
            E L   Y KK    ++V+P+  + S  V +PYNS+L+   L  + D   +LD+ A+  I    L +  PT+
Sbjct:  155 ETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTF 225          
The following BLAST results are available for this feature:
BLAST of EY649579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
TBG1_EUPOC1.131e-1324.41Tubulin gamma-1 chain OS=Euplotes octocarinatus PE... [more]
TBG_PLAFO1.470e-1322.13Tubulin gamma chain OS=Plasmodium falciparum (isol... [more]
TBG_USTVI1.907e-1324.26Tubulin gamma chain OS=Ustilago violacea GN=TUB4 P... [more]
TBG_EUPAE1.908e-1325.40Tubulin gamma chain OS=Euplotes aediculatus PE=2 S... [more]
TBG2_EUPOC2.478e-1324.41Tubulin gamma-2 chain OS=Euplotes octocarinatus PE... [more]
TBG_EMENI2.479e-1324.62Tubulin gamma chain OS=Emericella nidulans GN=mipA... [more]
TBG3_MAIZE2.484e-1322.00Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TU... [more]
TBG2_MAIZE5.427e-1322.00Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]
TBE_HUMAN9.136e-1326.75Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBG2_ARATH1.188e-1221.80Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-B11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649579 ID=EY649579; Name=EY649579; organism=Citrus sinensis; type=EST; length=827bp
CCACGCGTCCGGTTGATCTCTGCCTTGACCGCATCAGGAGCTGGCTGATA
ACTGCACTGGTCTCCAGGGCATTCCTTGTTTTACAATGCTGTTGGTGGAG
GAACTGGCTCTGGTCTTGGGTCTCTTCTTCTGGAGAGGTTGCCTGCTGAC
TATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCTACCCATCTCCTCAGGT
CTCCACTTCTGTTGCTGAGCCTTACAACAGTGTCCTCTCAACCCACTCCC
TGTTGGAGCATACTGATGTGGCTGCTCTTCTCGACAGTGAGGCCATTTAT
GACATCTGCTGGCGCTCCCTTGACATTGAACGTCCTACCTATACTAACCT
CATATATACTTGGTTCTCAGGTCATTCCTTCATTGACTGCCTCACTGAAG
CCTGATGGCGCTTTGAATGTGGATGTGACTGAATTCCCAACCAACTTGGT
CCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTCATCT
CAGCTGATAAAGCCTACCATGAACAACTCTCAGGTGCTGAGATCACCAAC
AGTGCCTTCGAGCCCTCATCTATGATGGCCAAATGTGATCCTCGGCATGG
CAAGTACATGGCTCGCTGCCTCATGTACCGAGGTGATGTTGAGCCCAACG
ATGTCAATGCAGCTGTTGCTACCATCAACACCAACCGTCTCATCCAATTA
CTGGACTGGTGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGCCCCA
ACTGTGGTTCCTCGTGGAGACCTTGCCACGTGCAAAGGGCTGATTGCATG
ATCTACACTCCCCCATGTGCATGAGTG
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