EY649579

Overview
NameEY649579
Unique NameEY649579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:430..1253. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 47.3654 bits (111), Expect = 1.545e-12
Identity = 28/131 (21.37%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVIS--ADKAYHEQLSGAEITNSAFEPSSMM--AKCDPRHGKYMARCL-MYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGI 736
            L S ++   T +L+    +N ++     +L+P P++HF+++ Y P++S    K    + +  ++     +P +MM  A  D +  +     L + +G+V+P+ V+ ++  I   +L   + W P   +  +
Sbjct:  231 LVSTIMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNMMVSALTDKQSRQCFVSILNIIQGEVDPSQVHKSLQRIRERKLANFIPWGPASIQVAL 361          

HSP 2 Score: 46.595 bits (109), Expect = 1.545e-12
Identity = 29/83 (34.94%), Postives = 46/83 (55.42%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYPSP-QVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYT---NLIYTWFS 369
            ERL   + KK    ++V+P+  ++S  V +PYNS+L+   L +  D   +LD+ A+  I    L I+ PT+T   NL+ T  S
Sbjct:  155 ERLSERFPKKLIQTYSVFPNQDEISDVVVQPYNSILTLKRLTKCADSVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMS 237          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG_SCHPO (Tubulin gamma chain OS=Schizosaccharomyces pombe GN=tug1 PE=2 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.546e-12
Identity = 31/132 (23.48%), Postives = 63/132 (47.73%), Query Frame = 2
Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPV----ISADKAYHEQLSGAEITNSAFEPSSMMAKCDP-RHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGIN 739
            L S V+ + T +L+  G +N D+     +L+P PR HF+L+SY P     +   KA   + +  ++      P + M   +P +   +++   + +G+ +P DV+ ++  I   R    + W P   +  ++
Sbjct:  231 LVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAI-RKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361          

HSP 2 Score: 42.743 bits (99), Expect = 1.546e-12
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYPSPQ-VSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTY 342
            ERL   Y KK    ++V+P+ Q VS  V +PYNS+L+   L  + D   +LD+ A+  I    L  + PT+
Sbjct:  155 ERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTF 225          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG1_MAIZE (Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.603e-12
Identity = 32/150 (21.33%), Postives = 69/150 (46.00%), Query Frame = 2
Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPV-ISADKAYHEQLSGAEITNSAFEPSSMMAKCDPR-----HGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQPQLWFLVETLPRAKG 790
            L S V+ + T +L+  G +N D+     +L+P PR HF+++ Y P+ +        + +  ++     +  ++M     R       KY++   + +G+V+P  V+ ++  I   +L+  + W P   +  ++ +      V+T  R  G
Sbjct:  231 LVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIYWAPASIQVALSRKSP---YVQTTHRVSG 377          

HSP 2 Score: 41.2022 bits (95), Expect = 2.603e-12
Identity = 26/72 (36.11%), Postives = 39/72 (54.17%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYPSPQVSTS--VAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTY 342
            E L   Y KK    ++V+P+ QV TS  V +PYNS+L+   L  + D   +LD+ A+  I    L +  PT+
Sbjct:  155 ETLNDRYSKKLVQTYSVFPN-QVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTF 225          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.604e-12
Identity = 29/127 (22.83%), Postives = 61/127 (48.03%), Query Frame = 2
Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYH--EQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGIN 739
            S V+ + T +L+  G +N D+     +LVP PR HF+++ Y P+   D+      + +  ++     +  ++M     + G YM+   + +GDV+P  V+ ++  I    +   + W P   +  ++
Sbjct:  230 STVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLNDQKVSSIRKTTVLDVMRRLLQTRNIMTSGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERNVANFIPWGPASIQVALS 356          

HSP 2 Score: 38.1206 bits (87), Expect = 2.604e-12
Identity = 23/73 (31.51%), Postives = 38/73 (52.05%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            E+L   Y KK    ++V+P+   +  V +PYN +LS   L+ + D   +LD+ AI  I    L +  PT + +
Sbjct:  155 EKLNDHYPKKLVQTYSVFPND--NDIVVQPYNCILSMKRLVLNADCVVVLDNTAITSIAVDRLKLLHPTISQV 225          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 3.378e-12
Identity = 32/150 (21.33%), Postives = 71/150 (47.33%), Query Frame = 2
Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPV-ISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRH-----GKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQPQLWFLVETLPRAKG 790
            L S V+ + T +L+  G +N D+     +L+P PR HF+++ Y P+ +        + +  ++     +  ++M     R+      KY++   + +G+V+P  V+ ++  I   +L+  ++W P   +  ++ +      V+T  R  G
Sbjct:  231 LVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSP---YVQTAHRVSG 377          

HSP 2 Score: 39.2762 bits (90), Expect = 3.378e-12
Identity = 23/71 (32.39%), Postives = 37/71 (52.11%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYPSP-QVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTY 342
            E L   Y KK    ++V+P+  + S  V +PYNS+L+   L  + D   +LD+ A+  I    L +  PT+
Sbjct:  155 ETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTF 225          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 3.379e-12
Identity = 32/150 (21.33%), Postives = 71/150 (47.33%), Query Frame = 2
Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPV-ISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRH-----GKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQPQLWFLVETLPRAKG 790
            L S V+ + T +L+  G +N D+     +L+P PR HF+++ Y P+ +        + +  ++     +  ++M     R+      KY++   + +G+V+P  V+ ++  I   +L+  ++W P   +  ++ +      V+T  R  G
Sbjct:  231 LVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSP---YVQTTHRVSG 377          

HSP 2 Score: 39.6614 bits (91), Expect = 3.379e-12
Identity = 23/71 (32.39%), Postives = 37/71 (52.11%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYPSP-QVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTY 342
            E L   Y KK    ++V+P+  + S  V +PYNS+L+   L  + D   +LD+ A+  I    L +  PT+
Sbjct:  155 ETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLANPTF 225          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 4.388e-12
Identity = 31/150 (20.67%), Postives = 71/150 (47.33%), Query Frame = 2
Query:  371 VIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYH-----EQLSGAEITNSAFEPSSMMAKC-----DPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQPQLWFLVETLPRAKG 790
            V+ + T +L+  G +N D+     +L+P PR HF+++ Y P+ + + A        + +  ++     +P ++M        D  + KY++   + +G+V+P+ V+ ++  I   +    ++W P   +  ++ +      V+T  R  G
Sbjct:  235 VMAASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTAENAAGQVTSNIRKTTVLDVMRRLLQPKNIMVSTHTKSRDIANAKYISILNIIQGEVDPSQVHKSLQRIRERKQANFIEWGPASIQVALSKKSP---YVQTAHRVSG 381          

HSP 2 Score: 39.6614 bits (91), Expect = 4.388e-12
Identity = 21/63 (33.33%), Postives = 34/63 (53.97%), Query Frame = 1
Query:  151 YGKKSKLGFTVYPSPQVSTSVA-EPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERP 336
            Y KK    ++V+P+   S+ V  +PYNS+L+   L  H D   +LD+ A+  I    L + +P
Sbjct:  161 YSKKLIQTYSVFPNQSESSDVVVQPYNSLLTLKRLTLHADAVVVLDNTALDKIAVERLHLHKP 223          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.534e-12
Identity = 35/124 (28.23%), Postives = 69/124 (55.65%), Query Frame = 2
Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGI 736
            + ++ SLT+S + +G+LN+D+ E   NLVP+P++H+++SS  P+ +            ++ + AF     + + DPRH  Y+A  L+ RG+V+ +D+   +  +     +Q + W   G+K  +
Sbjct:  263 ANLLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERLKP--ALQFVSWNQEGWKTSL 384          
BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBG_PHYPA (Tubulin gamma chain OS=Physcomitrella patens GN=TUBG1 PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 7.394e-12
Identity = 33/150 (22.00%), Postives = 70/150 (46.67%), Query Frame = 2
Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYH-EQLSGAEITNSAFEPSSMMAKCDPR-----HGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQPQLWFLVETLPRAKG 790
            L S V+ + T +L+  G +N D+     +L+P PR HF+++ Y P+    +A    + +  ++     +  ++M     R       KY++   + +G+V+P  V+ ++  I   +L   ++W P   +  ++ +      V+T  R  G
Sbjct:  231 LVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQANAIRKTTVLDVMRRLLQAKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSP---YVQTAHRVSG 377          

HSP 2 Score: 39.6614 bits (91), Expect = 7.394e-12
Identity = 24/71 (33.80%), Postives = 37/71 (52.11%), Query Frame = 1
Query:  133 ERLPADYGKKSKLGFTVYPSP-QVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTY 342
            E L   Y KK    ++V+P+  + S  V +PYNS+L+   L  + D   +LD+ A+  I    L I  PT+
Sbjct:  155 EALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHIPNPTF 225          
The following BLAST results are available for this feature:
BLAST of EY649579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
TBG2_DROME1.545e-1221.37Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBG_SCHPO1.546e-1223.48Tubulin gamma chain OS=Schizosaccharomyces pombe G... [more]
TBG1_MAIZE2.603e-1221.33Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV... [more]
TBG2_EUPCR2.604e-1222.83Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG1_ARATH3.378e-1221.33Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBG2_ORYSJ3.379e-1221.33Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]
TBG_CHLRE4.388e-1220.67Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]
TBE_MOUSE4.534e-1228.23Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBG_PHYPA7.394e-1222.00Tubulin gamma chain OS=Physcomitrella patens GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-B11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649579 ID=EY649579; Name=EY649579; organism=Citrus sinensis; type=EST; length=827bp
CCACGCGTCCGGTTGATCTCTGCCTTGACCGCATCAGGAGCTGGCTGATA
ACTGCACTGGTCTCCAGGGCATTCCTTGTTTTACAATGCTGTTGGTGGAG
GAACTGGCTCTGGTCTTGGGTCTCTTCTTCTGGAGAGGTTGCCTGCTGAC
TATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCTACCCATCTCCTCAGGT
CTCCACTTCTGTTGCTGAGCCTTACAACAGTGTCCTCTCAACCCACTCCC
TGTTGGAGCATACTGATGTGGCTGCTCTTCTCGACAGTGAGGCCATTTAT
GACATCTGCTGGCGCTCCCTTGACATTGAACGTCCTACCTATACTAACCT
CATATATACTTGGTTCTCAGGTCATTCCTTCATTGACTGCCTCACTGAAG
CCTGATGGCGCTTTGAATGTGGATGTGACTGAATTCCCAACCAACTTGGT
CCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTCATCT
CAGCTGATAAAGCCTACCATGAACAACTCTCAGGTGCTGAGATCACCAAC
AGTGCCTTCGAGCCCTCATCTATGATGGCCAAATGTGATCCTCGGCATGG
CAAGTACATGGCTCGCTGCCTCATGTACCGAGGTGATGTTGAGCCCAACG
ATGTCAATGCAGCTGTTGCTACCATCAACACCAACCGTCTCATCCAATTA
CTGGACTGGTGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGCCCCA
ACTGTGGTTCCTCGTGGAGACCTTGCCACGTGCAAAGGGCTGATTGCATG
ATCTACACTCCCCCATGTGCATGAGTG
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