EY649579 | Citrus Genome Database

Overview


Name	EY649579
Unique Name	EY649579
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	827

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7838	contig	Csv1_Contig7838:430..1253.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 9.588e-92
Identity = 111/128 (86.72%), Postives = 117/128 (91.41%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            +QVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFMLSSYAP+ISA+KAYHEQLS AEITNSAFEP+SMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  232 AQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 127.872 bits (320), Expect = 9.588e-92
Identity = 64/92 (69.57%), Postives = 70/92 (76.09%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKL F  +PSPQVST+V EPYNSVLSTHSLLEHTDVA +LD+EAIYDIC R+LDIERPTYTNL
Sbjct:  136 LMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNL 227

HSP 3 Score: 21.9422 bits (45), Expect = 9.588e-92
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 2.029e-90
Identity = 101/128 (78.91%), Postives = 110/128 (85.94%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            SQVI SLT SL+ DGA+NVD+TEF TNLVPYPRIHFMLSSYAP+IS +KAYHEQ S  EITNS FE SS+MAKCDPRHGKYMA CLMYRGDV P DVNAAV +I T R +Q +DWCPTGFKCGINYQP
Sbjct:  232 SQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPIISVEKAYHEQHSVPEITNSVFESSSVMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVHSIKTKRTVQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 134.035 bits (336), Expect = 2.029e-90
Identity = 65/92 (70.65%), Postives = 72/92 (78.26%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYG+KSKLGFT+YPSPQ+ST+V EPYNSVLSTHSL+EHTDV  LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGRKSKLGFTIYPSPQISTAVVEPYNSVLSTHSLIEHTDVVVLLDNEAIYDICKRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 2.029e-90
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

HSP 4 Score: 21.9422 bits (45), Expect = 2.029e-90
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA_TRYBR (Tubulin alpha chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 4.474e-90
Identity = 102/127 (80.31%), Postives = 113/127 (88.98%), Query Frame = 2

Query:  368 QVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            QV+ SLTASL+ DGALNVD+TEF TNLVPYPRIHF+L+SYAPVISA+KAYHEQLS +EI+N+ FEP+SMM KCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DW PTGFKCGINYQP
Sbjct:  233 QVVSSLTASLRFDGALNVDLTEFQTNLVPYPRIHFVLTSYAPVISAEKAYHEQLSVSEISNAVFEPASMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQP 359

HSP 2 Score: 131.724 bits (330), Expect = 4.474e-90
Identity = 66/92 (71.74%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L Y+AV             ERL  DYGKKSKLG+TVYPSPQVST+V EPYNSVLSTHSLLEHTDVAA+LD+EAIYD+  R+LDIERPTYTNL
Sbjct:  136 LVYHAVGGGTGSGLGALLLERLSVDYGKKSKLGYTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAAMLDNEAIYDLTRRNLDIERPTYTNL 227

HSP 3 Score: 26.5646 bits (57), Expect = 4.474e-90
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 2

Query:   35 QELADNCTGLQG 70
            ++LADNCTGLQG
Sbjct:  123 RKLADNCTGLQG 134

HSP 4 Score: 21.9422 bits (45), Expect = 4.474e-90
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.284e-89
Identity = 105/130 (80.77%), Postives = 114/130 (87.69%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L +QVI SLT SL+ DGALNVD+TEF TNLVPYPRIHFML SYAPVISA+KAYHEQL+ AEITNS FEP++MMAKCDPRHGKYMA CLMYRGDV P DVNA+VA I T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVAQVISSLTTSLRFDGALNVDITEFQTNLVPYPRIHFMLCSYAPVISAEKAYHEQLTVAEITNSVFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNASVAVIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 126.716 bits (317), Expect = 1.284e-89
Identity = 61/73 (83.56%), Postives = 66/73 (90.41%), Query Frame = 1

Query:  133 ERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            ERL  DYGKKSKL F VYPSPQVST+V EPYNSVLSTHSLLEHTDVA +LD+EAIYDIC R+LDI+RPTYTNL
Sbjct:  155 ERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAFMLDNEAIYDICKRALDIDRPTYTNL 227

HSP 3 Score: 25.0238 bits (53), Expect = 1.284e-89
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LAD CTGLQG   F
Sbjct:  123 RKLADQCTGLQGFLVF 138

HSP 4 Score: 21.9422 bits (45), Expect = 1.284e-89
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.466e-89
Identity = 101/128 (78.91%), Postives = 107/128 (83.59%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            SQ I SLT SL+ DGA+NVD+TEF TNLVPYPRIHFMLSSYAPVIS+ KAYHEQ S  EIT S FEPS+MMAKCDPRHGKYMA CLMYRGDV P DVN AVA I   R IQ +DWCPTGFKCGINYQP
Sbjct:  232 SQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 133.265 bits (334), Expect = 1.466e-89
Identity = 66/92 (71.74%), Postives = 72/92 (78.26%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  D+GKKSKLGFT+YPSPQVST+V EPYNSVLSTHSLLEHTDV  LLD+EAIYDIC RSLDIERPTY+NL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSNL 227

HSP 3 Score: 27.335 bits (59), Expect = 1.466e-89
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.058e-88
Identity = 100/127 (78.74%), Postives = 113/127 (88.98%), Query Frame = 2

Query:  368 QVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            QV+ +LTASL+ DGALNVD+TEF TNLVPYPRIHF+L++YAPVISA+KAYHEQLS +EI+N+ FEP+SMM KCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DW PTGFKCGINYQP
Sbjct:  233 QVVSALTASLRFDGALNVDLTEFQTNLVPYPRIHFVLTTYAPVISAEKAYHEQLSVSEISNAVFEPASMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQP 359

HSP 2 Score: 129.413 bits (324), Expect = 1.058e-88
Identity = 65/92 (70.65%), Postives = 72/92 (78.26%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L Y+AV             ERL  DYGKKSKLG+TVYPSPQVST+V EPYNSVLSTHSLLEHTDVAA+LD+EAIYD+   +LDIERPTYTNL
Sbjct:  136 LVYHAVGGGTGSGLGALLLERLSVDYGKKSKLGYTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAAMLDNEAIYDLTRANLDIERPTYTNL 227

HSP 3 Score: 26.5646 bits (57), Expect = 1.058e-88
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 2

Query:   35 QELADNCTGLQG 70
            ++LADNCTGLQG
Sbjct:  123 RKLADNCTGLQG 134

HSP 4 Score: 21.9422 bits (45), Expect = 1.058e-88
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.576e-88
Identity = 105/130 (80.77%), Postives = 115/130 (88.46%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L +QVI SLT SL+ DGALNVD+TEF TNLVPYPRIHFML+SYAPVISA+KA+HEQLS AE+TN+ F+PSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVA I T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVAQVISSLTTSLRFDGALNVDITEFQTNLVPYPRIHFMLASYAPVISAEKAFHEQLSVAELTNTVFDPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAVIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 123.25 bits (308), Expect = 4.576e-88
Identity = 59/73 (80.82%), Postives = 64/73 (87.67%), Query Frame = 1

Query:  133 ERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            ERL  DYGKKSKL F VYPSPQVST+V EPYNSVLSTH LLEHTDVA +LD+EAIYD+C RSLDIERP+Y NL
Sbjct:  155 ERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHGLLEHTDVAFMLDNEAIYDLCKRSLDIERPSYANL 227

HSP 3 Score: 23.483 bits (49), Expect = 4.576e-88
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LAD C+GLQG   F
Sbjct:  123 RKLADQCSGLQGFLVF 138

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 5.962e-88
Identity = 104/128 (81.25%), Postives = 113/128 (88.28%), Query Frame = 2

Query:  365 SQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            +QVI SLTASL+ DGALNVD+TEF TNLVPYPRIHFMLSSY PVISA+KAYHEQLS AEITNS+FEP+SMMAKCDPRHGKYMA C+M+RGDV P DVNAAVATI T R IQ +DW P GFK GINYQP
Sbjct:  232 AQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYGPVISAEKAYHEQLSVAEITNSSFEPASMMAKCDPRHGKYMACCMMFRGDVVPKDVNAAVATIKTKRTIQFVDWSP-GFKVGINYQP 358

HSP 2 Score: 129.798 bits (325), Expect = 5.962e-88
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 1

Query:  133 ERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            ERL  DYGKKSKL FTVYPSPQVST+V EPYNSVLSTHSLLEHTDVA +LD+EA+YDIC R+LDIERPTYTNL
Sbjct:  155 ERLSVDYGKKSKLCFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNL 227

HSP 3 Score: 26.5646 bits (57), Expect = 5.962e-88
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 2

Query:   35 QELADNCTGLQG 70
            ++LADNCTGLQG
Sbjct:  123 RKLADNCTGLQG 134

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.921e-87
Identity = 107/130 (82.31%), Postives = 114/130 (87.69%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L +QVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFML+SYAP+ISA+KAYHEQLS AEITNS FEP+ MM  CDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPIISAEKAYHEQLSVAEITNSVFEPAGMMTNCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 114.39 bits (285), Expect = 1.921e-87
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 1

Query:  133 ERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            ERL  DYG+KSKL F + P+PQV+T+V EPYNSVLSTH+LLEHTD    LD+EA+YD+C R+LDIERPTYTNL
Sbjct:  155 ERLSVDYGRKSKLSFAITPAPQVATAVVEPYNSVLSTHALLEHTDCTFCLDNEALYDVCRRNLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 1.921e-87
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

HSP 4 Score: 21.9422 bits (45), Expect = 1.921e-87
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA1_PELFA (Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.239e-87
Identity = 108/130 (83.08%), Postives = 115/130 (88.46%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L +QVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFML+SYAP+ISA+KAYHEQLS AEITNS FEP+ MM KCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPIISAEKAYHEQLSVAEITNSVFEPAGMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 114.39 bits (285), Expect = 2.239e-87
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 1

Query:  133 ERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            ERL  DYG+KSKL F + P+PQV+T+V EPYNSVLSTH+LLEHTD    LD+EA+YD+C R+LDIERPTYTNL
Sbjct:  155 ERLSVDYGRKSKLSFAITPAPQVATAVVEPYNSVLSTHALLEHTDCTFCLDNEALYDVCRRNLDIERPTYTNL 227

HSP 3 Score: 26.1794 bits (56), Expect = 2.239e-87
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++L+DNCTGLQG   F
Sbjct:  123 RKLSDNCTGLQGFLVF 138

The following BLAST results are available for this feature:

BLAST of EY649579 vs. ExPASy Swiss-Prot

BLAST of EY649579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399


Match Name	E-value	Identity	Description
TBA_NEOCA	9.588e-92	86.72	Tubulin alpha chain OS=Neospora caninum GN=TUBA PE...	[more]
TBA2_ELEIN	2.029e-90	78.91	Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ...	[more]
TBA_TRYBR	4.474e-90	80.31	Tubulin alpha chain OS=Trypanosoma brucei rhodesie...	[more]
TBAD_PHYPO	1.284e-89	80.77	Tubulin alpha-1A chain OS=Physarum polycephalum GN...	[more]
TBA1_ARATH	1.466e-89	78.91	Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T...	[more]
TBA_TRYCR	1.058e-88	78.74	Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1	[more]
TBAE_PHYPO	4.576e-88	80.77	Tubulin alpha-2B chain OS=Physarum polycephalum GN...	[more]
TBA_EUPVA	5.962e-88	81.25	Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1	[more]
TBA2_PELFA	1.921e-87	82.31	Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU...	[more]
TBA1_PELFA	2.239e-87	83.08	Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TU...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-001-B11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY649579 ID=EY649579; Name=EY649579; organism=Citrus sinensis; type=EST; length=827bp
CCACGCGTCCGGTTGATCTCTGCCTTGACCGCATCAGGAGCTGGCTGATA
ACTGCACTGGTCTCCAGGGCATTCCTTGTTTTACAATGCTGTTGGTGGAG
GAACTGGCTCTGGTCTTGGGTCTCTTCTTCTGGAGAGGTTGCCTGCTGAC
TATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCTACCCATCTCCTCAGGT
CTCCACTTCTGTTGCTGAGCCTTACAACAGTGTCCTCTCAACCCACTCCC
TGTTGGAGCATACTGATGTGGCTGCTCTTCTCGACAGTGAGGCCATTTAT
GACATCTGCTGGCGCTCCCTTGACATTGAACGTCCTACCTATACTAACCT
CATATATACTTGGTTCTCAGGTCATTCCTTCATTGACTGCCTCACTGAAG
CCTGATGGCGCTTTGAATGTGGATGTGACTGAATTCCCAACCAACTTGGT
CCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTCATCT
CAGCTGATAAAGCCTACCATGAACAACTCTCAGGTGCTGAGATCACCAAC
AGTGCCTTCGAGCCCTCATCTATGATGGCCAAATGTGATCCTCGGCATGG
CAAGTACATGGCTCGCTGCCTCATGTACCGAGGTGATGTTGAGCCCAACG
ATGTCAATGCAGCTGTTGCTACCATCAACACCAACCGTCTCATCCAATTA
CTGGACTGGTGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGCCCCA
ACTGTGGTTCCTCGTGGAGACCTTGCCACGTGCAAAGGGCTGATTGCATG
ATCTACACTCCCCCATGTGCATGAGTG