FC921798

Overview
NameFC921798
Unique NameFC921798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13533 contig Csv1_Contig13533:1..507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921798 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.871e-32
Identity = 59/113 (52.21%), Postives = 84/113 (74.34%), Query Frame = 3
Query:   96 FPVISLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQ--TEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 428
            FPVI++E + G ER A +E++++ACENWGFFE++NHGI  E MD VE++TK HY++  EQRF E  +    EG     +   +DWESTF+VRHLP+S I ++PDLD++YR++M
Sbjct:    7 FPVINMELLAGEERPAAMEQLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDDVNKAEKLDWESTFFVRHLPESNIADIPDLDDDYRRLM 119          
BLAST of FC921798 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.511e-29
Identity = 57/113 (50.44%), Postives = 85/113 (75.22%), Query Frame = 3
Query:   93 NFPVISLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQ-TEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 428
            +FPVI++E + G++R A +  + +ACENWGFFEL+NHGI  E M+ VE + K HYR+  EQRFKE  AS+ L+ ++  + +++DWESTF++RHLP S I+++PDLD++ R  M
Sbjct:    5 SFPVINMELLQGSQRPAAMALLRDACENWGFFELLNHGISHELMNRVEAVNKEHYRRFREQRFKEF-ASKTLDSVENVDPDNLDWESTFFLRHLPTSNISQIPDLDDDCRATM 116          
BLAST of FC921798 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.972e-28
Identity = 56/113 (49.56%), Postives = 83/113 (73.45%), Query Frame = 3
Query:   93 NFPVISLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQT-EVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 428
            +FPVI++E + G++R A +  + +ACENWG +EL+NHGI  E M+ VE + K HYR+  EQRFKE  AS+ L+ ++  E  ++DWESTF++RHLP S I+++PDLD++ R  M
Sbjct:    5 SFPVINMELLQGSQRPAAMALLRDACENWGLYELLNHGISHELMNRVETVNKEHYRRFREQRFKEF-ASKTLDTVENVEPENLDWESTFFLRHLPTSNISQIPDLDDDCRSTM 116          
BLAST of FC921798 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.437e-22
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 3
Query:  111 LENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYR----KCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 428
            +E + G+ R+  +  + +ACENWGFFEL+NHGI  E  +  E + K HYR    +  EQRFKE  A     G   + +++DWESTF++RHLP S I++VPDLDE+    M
Sbjct:    1 MELLEGSRRSDAMAVLRDACENWGFFELLNHGISHEPNEQSETVNKEHYREHYRRFREQRFKEFAAKTLDSGENVDGDNLDWESTFFLRHLPTSNISQVPDLDEDCGSTM 110          
BLAST of FC921798 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.286e-12
Identity = 41/116 (35.34%), Postives = 66/116 (56.90%), Query Frame = 3
Query:   99 PVISLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFK-----ELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDE---EYRK 422
            PVI    ++G ERA  + +I   CE WGFF+LVNHGI  E ++ V++++   Y K  E+RF+     +L+ +   EG    ++++DWE  F ++   +   N  PD +E   EYR+
Sbjct:    4 PVIDFSKLDGKERAETMARIANGCEEWGFFQLVNHGIPVELLERVKKVSSECY-KLREERFEGSKPVQLLDTLVKEGDGQRLDNVDWEDVFVLQDDNEWPSNP-PDFEETMKEYRE 117          
The following BLAST results are available for this feature:
BLAST of FC921798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ACCO1_ORYSI9.871e-3252.211-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO2_DORSP3.511e-2950.441-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCO1_DORSP2.972e-2849.561-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCO_DENCR2.437e-2245.451-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO_MUSAC2.286e-1235.341-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]

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Properties
Property NameValue
Genbank descriptionC06052E03T7 RindPdigS Citrus sinensis cDNA clone C06052E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921798 ID=FC921798; Name=FC921798; organism=Citrus sinensis; type=EST; length=508bp
CGCGGGGAATTAACAAGCTCACAAACACATACACAAACACAAACACTCAC
AAACACACAGCCTTGTTAAAGAAAGAATTCAGAGATATGGAGAACTTCCC
CGTTATCAGCTTGGAGAACATCAATGGTGCTGAAAGAGCGGCTATCTTGG
AGAAGATCAACGAGGCCTGTGAGAACTGGGGCTTCTTTGAGCTGGTGAAT
CATGGAATTGAGCCGGAGTTTATGGACACAGTGGAGAGATTGACCAAGGC
GCATTACAGAAAATGTATGGAGCAAAGATTCAAGGAGCTTGTTGCAAGCA
GGGCACTTGAAGGTATCCAAACCGAGGTCAATGACATGGACTGGGAAAGC
ACTTTCTATGTGCGTCACCTCCCTCAGTCGACCATCAATGAAGTCCCAGA
TCTTGATGAGGAATACAGGAAGGTGATGAAGGAATTTGCATTGAAATTGG
AGAAATTAGCAGAGGAGCTATTGGACTTGTTATGCGAGAATCTTGGATTA
GAGAAGGG
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