CX675561

Overview
NameCX675561
Unique NameCX675561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.695e-21
Identity = 88/272 (32.35%), Postives = 133/272 (48.90%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYL--AVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNAR---SAARTFVLG-GLSDKHFGLSNFWVADRI-----------NEIDTEALRILNLCYER 760
            + +A TNRPDILD AL+RPGRFDR I I KP L GR  I  VH     +A ++  L   +A++T G  GA++AN+   AA+   R     +  +   QA +    G ++RK +  SPE  + VA +EA  AV          +  V+I PR    LGY +    ++     +L+ Q L D +T+ L  R ++EL        ++ +  +D+ +   S A   V   G+SDK  G  N+   D             + ID+E  RI+  C++R
Sbjct:  489 VVLAGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVKLNHFEQAIE-RVIGGVERKSKLLSPEEKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRGQGALGYAQ----YLPGDIFLLTEQQLKDRMTMSLGGRVSEEL-----HFPSVTSGASDDFKKVTSMATAMVTELGMSDK-IGWVNYQKRDDSDLTKPFSDETGDIIDSEVYRIVQECHDR 749          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.009e-21
Identity = 75/218 (34.40%), Postives = 115/218 (52.75%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ-VAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQS-LLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 649
            + +A+TNR D+LD AL+RPGRFDR I I  P +  R  IL+VHA+ K ++  +  L VA  T G  GA+L N++  A +  +RD RT I  +D+ +A      G   +     +  R+ VA +EA  A+V ++      ++ +TI PR G+  GY    +   K  +  L R+S LL  I   +  RAA+E   G  +++T  +     A + AR  V
Sbjct:  368 VVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILQVHAKNKNLSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTINMNDIDEAIDRVIAGPAKKSRVVSDADRKLVAYHEAGHALVGLHVHSNDEVQKITIIPR-GQAGGYT---LSTPKSGDLNLKRKSDLLAMIATAMGGRAAEEEIYGPLEITTGASSDFYKATNIARAMV 581          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.330e-20
Identity = 65/197 (32.99%), Postives = 110/197 (55.84%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLA--VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCG 580
            + +A TNRPDILD AL+RPGRFDR+I I KP + GR +I +++ +K  + ++  + +  +A++T G  GA++AN+   AA+   R   T+IT     ++A     G L++K +  S    R VA +E+  AV        + +  VTI PR    LG+ +    ++  +  +++++ L D   + L  RAA+E+  G
Sbjct:  476 VVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFRIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARSEETQITMQH-FESAIDRIIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQ----YVPNENLLMTKEQLFDMTCMTLGGRAAEEVLIG 667          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.043e-20
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 2
Query:    8 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 298
            I +TNRPD LDPAL+RPGR DRKI IP P  +GRMEILK+H  K     ++DY A+  +TDG  GA+L N+V  A    +++ R  +   DL+ AA+
Sbjct:  275 IMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAAR 371          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.043e-20
Identity = 77/233 (33.05%), Postives = 118/233 (50.64%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR----KKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNAR----SAARTFVLGGLSDK 670
            + +A TNRPDILDPAL RPGRFDR+I+I  P + GR  I KVH R       ++ D     +A++T G  GA+++N+   AA+   R     +      QA +    G L++K +   P     VA +EA  AVV         +  V+I PR G+ LGY +    ++  ++ + +R+ L D + + L  R A++L+ G+     I     D+ R    SA    V  G+S+K
Sbjct:  440 VVLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFKVHLRPLKLDGSLSKDALSRKLAALTPGFTGADISNVCNEAALIAARHLSPSVQERHFEQAIE-RVIGGLEKKTQVLQPSEKTTVAYHEAGHAVVGWFLEHADPLLKVSIIPR-GKGLGYAQ----YLPREQFLYTREQLFDRMCMMLGGRVAEQLFFGQ-----ITTGAQDDLRKVTQSAYAQIVQFGMSEK 661          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.780e-20
Identity = 66/198 (33.33%), Postives = 109/198 (55.05%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLA--VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGE 583
            + +A TNRPDILD AL+RPGRFDR+I I KP + GR +I K++ +K  +  +  Y +  +A++T G  GA++AN+   AA+   R     +T     ++A     G L++K R  S    R VA +E+  AVV       + +  VTI PR    LG+ +    ++  +  +++++ L D   + L  RAA+++  G+
Sbjct:  462 VVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAH-FESAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVVGWFLEHAEPLLKVTIVPRGTAALGFAQ----YVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGK 654          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.855e-20
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 2
Query:    8 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 292
            IA+TNRPDILDPAL+RPGRFDR I +P P   GR+EILKVH RK  +   VD   +A +T+G  GA+L  I   A +  +RD RT +T DD L+A
Sbjct:  281 IAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILKVHTRKMNL-KGVDLRVIAEITEGASGADLKAIATEAGMFAIRDRRTYVTQDDFLKA 374          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.156e-19
Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = 2
Query:    8 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 292
            IA+TNRPDILDPAL+RPGRFDR I +P P   GR+EILKVH R+  +   VD  A+A MT+G  GA+L  I   A +  +R+ RT +T +D L+A
Sbjct:  283 IAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KGVDLRAIAEMTEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKA 376          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.510e-19
Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = 2
Query:    8 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 292
            IA+TNRPDILDPAL+RPGRFDR I +P P   GR+EILKVH RK  +  +VD   +A +T+G  GA+L  I   A +  +RD RT +T +D L+A
Sbjct:  281 IAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNLR-NVDLSIIADITEGASGADLKAIATEAGMFAIRDRRTYVTQEDFLKA 374          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.973e-19
Identity = 61/161 (37.89%), Postives = 87/161 (54.04%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--PMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ-VAINEAAMAV----VAVNFPDLKNIEFVTIAPRAGRELGY 463
            I + +TNR D+LDPAL RPGRFDR + +  P   GR  ILKVH  +K  P+  DVD   +A+MT G  GA+LAN+V  AA+   R  +  +   D + A +    G+  +  +     +  VA +E   AV    VA   P    +E ++I PR+G  LG+
Sbjct:  487 IVLGATNRADVLDPALRRPGRFDRVVMVEAPDRFGRESILKVHVSRKELPLGKDVDLSDIAAMTTGFTGADLANLVNEAALLAGRSNKEIVEKIDFICAVERSIAGIEKKHAKLKGNEKAVVARHEVGHAVVGTAVANLLPGQPRVEKLSILPRSGGALGF 647          
The following BLAST results are available for this feature:
BLAST of CX675561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
RCA1_YEAST4.695e-2132.35Mitochondrial respiratory chain complexes assembly... [more]
FTSH_MYCPN8.009e-2134.40Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH8_ORYSJ2.330e-2032.99Cell division protease ftsH homolog 8, mitochondri... [more]
PRS10_SCHPO3.043e-2049.48Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
AFG31_MOUSE3.043e-2033.05AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
FTSH3_ARATH6.780e-2033.33Cell division protease ftsH homolog 3, mitochondri... [more]
PSMR_PYRKO8.855e-2054.74Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PSMR_PYRHO1.156e-1953.68Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_THEGJ1.510e-1953.68Proteasome-activating nucleotidase OS=Thermococcus... [more]
FTSH7_ORYSJ1.973e-1937.89Cell division protease ftsH homolog 7, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63B02-C3-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675561 ID=CX675561; Name=CX675561; organism=Citrus sinensis; type=EST; length=764bp
GATCACTATAGCTTCCACAAATAGACCTGATATTCTAGATCCAGCCCTTG
TGAGACCTGGACGGTTTGACCGTAAAATTTTCATCCCTAAACCTGGCCTT
ATTGGTCGTATGGAAATTCTGAAGGTCCATGCTCGTAAGAAGCCAATGGC
TGATGATGTAGACTATCTGGCTGTTGCTAGTATGACTGATGGAATGGTTG
GTGCAGAACTAGCTAATATAGTTGAAGTTGCTGCTATTAACATGATGCGT
GATGGAAGGACTGAGATTACAACGGATGACTTGCTTCAAGCTGCACAAAT
AGAAGAGAGGGGAATGCTAGATAGAAAGGAGAGGAGCCCTGAGACATGGA
GACAAGTCGCAATCAATGAAGCAGCAATGGCTGTTGTAGCTGTGAACTTC
CCTGACCTTAAAAATATTGAGTTTGTAACGATTGCTCCTCGAGCTGGTAG
GGAGTTGGGTTATGTTCGTATGAAAATGGACCACATGAAATTTAAGGAAG
GTATGCTAAGTCGACAATCCTTGTTGGATCATATCACCGTTCAACTAGCA
CCACGTGCAGCTGATGAGCTTTGGTGTGGCGAGGGCCAGCTGAGTACAAT
ATGGGCAGAAACAGCAGACAATGCTAGGTCAGCAGCACGGACCTTTGTTC
TTGGTGGACTTTCTGACAAGCATTTTGGGTTATCTAACTTCTGGGTGGCA
GATCGAATTAACGAAATTGATACTGAGGCATTGCGGATTCTGAACTTATG
TTATGAACGTGCAA
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