CK938747

Overview
NameCK938747
Unique NameCK938747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938747 vs. ExPASy Swiss-Prot
Match: RK33_PORYE (50S ribosomal protein L33, chloroplastic OS=Porphyra yezoensis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11
Identity = 32/65 (49.23%), Postives = 39/65 (60.00%), Query Frame = 2 
Query:  488 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 682
            MAK K  R+ + LEC+        K   G+ RY T KNR NTPSR+EL KFCP C +H +  EIK
Sbjct:    1 MAKSKGARIVITLECSDKAGEFAQKRKPGVFRYTTTKNRRNTPSRIELNKFCPNCNQHCIFKEIK 65
[Close]
BLAST of CK938747 vs. ExPASy Swiss-Prot
Match: RK33_PSINU (50S ribosomal protein L33, chloroplastic OS=Psilotum nudum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 2 
Query:  494 KGKEVRVRVILECTSCV-RNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGE 676
            K K  RV + LEC  C  +    ++    SRY TQKNR+NTP+RLEL+KFCP C KHT+H E
Sbjct:    4 KVKGARVTIHLECIDCNNQQDSGRKLASFSRYTTQKNRYNTPTRLELKKFCPSCSKHTIHIE 65
The following BLAST results are available for this feature:
BLAST of CK938747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
RK33_PORYE4.348e-1149.2350S ribosomal protein L33, chloroplastic OS=Porphy... [more]
RK33_PSINU7.416e-1153.2350S ribosomal protein L33, chloroplastic OS=Psilot... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004438_G07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938747 ID=CK938747; Name=CK938747; organism=Citrus sinensis; type=EST; length=896bp
GGGGAACGGGGTGAAGAAGATTAGAGCTAGAATCAAATATTTGTGACTAA
TCTCTCTTTCCCCTCTTTTCGTTTTTTTGTTTTACAATTAGAAAGAAGGA
AAGCGAAAGAAAAAAGGTGGCTTCAACCTCAGCGAAACCCGGGTTCAGGC
TCCGATTAAATTAATTATTAATTATCCAGTTAAAAGCAAATAGACAGGTA
AAAGAAAACGGAAATCGAAATATGGCTAGGGTAAGAGTATCCTCCACTAC
AAGATCCTTAAATGAAATACTGGACTGCGATTTAGCAATATAGTTAGAAA
TTCTTGTATTACTTATTATTTTTTATTTTGATTTCCTATTTATTTACTAT
ATTGATTGCAATAAAATCTTTATTTCATAAGTTTTTTTTGAGTGGTTAGC
AACTTCTATTTTTTTGTCCCGTGCTTCTTATTCGTTGCGGGTCGGAAAAT
AGAAAAGTTGGGTGAATCAAAAACCCCAAGGAGGTTCATGGCCAAGGGTA
AAGAGGTCCGAGTAAGGGTTATTTTGGAATGTACTAGTTGTGTTCGAAAC
GGTGTTAATAAGGAATCAAGGGGTATTTCCAGATATATTACTCAAAAGAA
TCGACACAATACACCCAGTCGATTGGAATTGAGAAAATTCTGTCCCTATT
GTTACAAGCATACACTTCATGGGGAGATAAAAAAATAGATAGAGTCAAGC
CGCGTGCTTTTGTGTCGCCCTTCCAAGGGACATGAAAAACTAATCTAGAT
ATATATCTAGATTATTTCATATATTTTAATAAAAACAAATAAATAAATCT
AGACAAACCAAATCCTATAATTGATTCTATAAATCATTTTTTGGTTTCAT
CGAAATGGGATTTTAGGGATAAGGAATAAACAAATTATGGATAAAA
back to top