FC921795

Overview
NameFC921795
Unique NameFC921795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921795 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.049e-12
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = 3
Query:    3 RADRCISEGLSSVMYRASFGDDASTSKK----FEATVTRLNPSS-QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE 368
            R D  + EG    +++        T+ K        V +L     QG KE++ +VN L  L HPNL KL+G+      + R+L+YE +  GSL+  ++ R    P+ W  R+K+A+ AA+GLTFLH+
Sbjct:   84 RPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVE--GENRLLVYEFMPKGSLENHLF-RRGAQPLTWAIRMKVAIGAAKGLTFLHD 207          
BLAST of FC921795 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.049e-12
Identity = 45/127 (35.43%), Postives = 69/127 (54.33%), Query Frame = 3
Query:    3 RADRCISEGLSSVMYRASFGDDASTSKK----FEATVTRLNPSS-QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLH 365
            R D  + EG    +++    +   T+ K        V +LN    QG +E++ +VN L    HPNL KL+G+   D  + R+L+YE +  GSL+  ++ R S   P+ W  R+K+AL AA+GL FLH
Sbjct:   70 RPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLED--EHRLLVYEFMPRGSLENHLFRRGSYFQPLSWTLRLKVALGAAKGLAFLH 194          
BLAST of FC921795 vs. ExPASy Swiss-Prot
Match: Y1677_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.370e-12
Identity = 42/119 (35.29%), Postives = 70/119 (58.82%), Query Frame = 3
Query:   21 SEGLSSVMYRASFGD----DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 365
            ++  S  + R SFG          K+    +T  +PSS   ++F+ +V  L+ + H NL  L+G+   + +D+R+L+YE + +GSL   ++G SD  P+DW TR++IA  AA+GL +LH
Sbjct:  605 TDNFSKKVGRGSFGSVYYGRMKDGKEVAVKITA-DPSSHLNRQFVTEVALLSRIHHRNLVPLIGYC--EEADRRILVYEYMHNGSLGDHLHGSSDYKPLDWLTRLQIAQDAAKGLEYLH 720          
BLAST of FC921795 vs. ExPASy Swiss-Prot
Match: LRKA3_ARATH (Lectin-domain containing receptor kinase A4.3 OS=Arabidopsis thaliana GN=LECRKA4.3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.370e-12
Identity = 45/128 (35.16%), Postives = 70/128 (54.69%), Query Frame = 3
Query:    3 RADRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS-QGVKEFINDVNTLASLQHPNLCKLLGF--HARDGSDQRMLIYERLFHGSLDRLIYG--RSDGPPIDWNTRVKIALCAAQGLTFLHEE 371
            + +R +  G   ++YR +       S   +  V ++ P+S QGV+EF+ ++ +L  L+H NL  L G+  H  D     +LIY+ + +GSLD L+Y   R  G  + WN R +IA   A GL +LHEE
Sbjct:  364 KENRVVGTGGFGIVYRGNI-----RSSSDQIAVKKITPNSMQGVREFVAEIESLGRLRHKNLVNLQGWCKHRND----LLLIYDYIPNGSLDSLLYSKPRRSGAVLSWNARFQIAKGIASGLLYLHEE 482          
BLAST of FC921795 vs. ExPASy Swiss-Prot
Match: PSKR1_DAUCA (Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.789e-12
Identity = 43/112 (38.39%), Postives = 69/112 (61.61%), Query Frame = 3
Query:   39 VMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP-IDWNTRVKIALCAAQGLTFLHE 368
            ++Y+A+  D    + K      RL+  + Q  +EF  +V TL+  QHPNL  LLG+   +  + ++LIY  + +GSLD  ++ + DGPP +DW TR++IA  AA+GL +LH+
Sbjct:  756 LVYKATLPDGTKVAIK------RLSGDTGQMDREFQAEVETLSRAQHPNLVHLLGYC--NYKNDKLLIYSYMDNGSLDYWLHEKVDGPPSLDWKTRLRIARGAAEGLAYLHQ 859          
BLAST of FC921795 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.337e-12
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   90 EATVTRLNPSS-QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQ 383
            E  V RL+ +S QG  EF+N+V  +A LQH NL ++LG       D++MLIYE L + SLD  ++G++    ++WN R  I    A+GL +LH++  F+
Sbjct:  552 EIAVKRLSKTSVQGTDEFMNEVTLIARLQHINLVQVLGCCIE--GDEKMLIYEYLENLSLDSYLFGKTRRSKLNWNERFDITNGVARGLLYLHQDSRFR 648          
BLAST of FC921795 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.052e-12
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 3
Query:  117 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYG-RSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQ 383
            S QG +EF+N++  ++ LQHPNL KL GF       Q +L YE + + SL   ++  +    P+DW TR KI    A+GL FLHEE P +
Sbjct:  715 SRQGNREFLNEIGAISCLQHPNLVKLHGFCVERA--QLLLAYEYMENNSLSSALFSPKHKQIPMDWPTRFKICCGIAKGLAFLHEESPLK 802          
BLAST of FC921795 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.799e-12
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 3
Query:   81 KKFEATVTRLNP----SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP-PIDWNTRVKIALCAAQGLTFLHEE 371
            K F+ T+  +      S QG +EF+N++  +++L HPNL KL G     G  Q +L+YE + + SL R ++G  +    +DW TR KI +  A+GL +LHEE
Sbjct:  642 KLFDGTIIAVKQLSTGSKQGNREFLNEIGMISALHHPNLVKLYGCCVEGG--QLLLVYEFVENNSLARALFGPQETQLRLDWPTRRKICIGVARGLAYLHEE 741          
BLAST of FC921795 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.879e-12
Identity = 42/118 (35.59%), Postives = 69/118 (58.47%), Query Frame = 3
Query:   18 ISEGLSSVMYRASF-GDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG-PPIDWNTRVKIALCAAQGLTFLH 365
            I +G    +Y+A   G+     KK     T      QG +EF+ ++ TL  ++HPNL  LLG+ +   S++++L+YE + +GSLD  +  ++     +DW+ R+KIA+ AA+GL FLH
Sbjct:  923 IGDGGFGTVYKACLPGEKTVAVKKLSEAKT------QGNREFMAEMETLGKVKHPNLVSLLGYCS--FSEEKLLVYEYMVNGSLDHWLRNQTGMLEVLDWSKRLKIAVGAARGLAFLH 1032          
BLAST of FC921795 vs. ExPASy Swiss-Prot
Match: BRL3_ARATH (Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.879e-12
Identity = 43/122 (35.25%), Postives = 72/122 (59.02%), Query Frame = 3
Query:    6 ADRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSD--GPPIDWNTRVKIALCAAQGLTFLH 365
            AD  I  G    +Y+A   D +  + K    VT      QG +EF+ ++ T+  ++H NL  LLG+  + G ++R+L+YE + +GSL+ +++ ++   G  +DW+ R KIA+ AA+GL FLH
Sbjct:  860 ADSMIGSGGFGDVYKAKLADGSVVAIKKLIQVT-----GQGDREFMAEMETIGKIKHRNLVPLLGY-CKIG-EERLLVYEYMKYGSLETVLHEKTKKGGIFLDWSARKKIAIGAARGLAFLH 974          
The following BLAST results are available for this feature:
BLAST of FC921795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
APK2B_ARATH1.049e-1234.65Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
APK1B_ARATH1.049e-1235.43Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
Y1677_ARATH1.370e-1235.29Probable LRR receptor-like serine/threonine-protei... [more]
LRKA3_ARATH1.370e-1235.16Lectin-domain containing receptor kinase A4.3 OS=A... [more]
PSKR1_DAUCA1.789e-1238.39Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR... [more]
SRK6_BRAOE2.337e-1240.40Putative serine/threonine-protein kinase receptor ... [more]
RKF1_ARATH3.052e-1242.22Probable LRR receptor-like serine/threonine-protei... [more]
Y1534_ARATH6.799e-1238.24Probable LRR receptor-like serine/threonine-protei... [more]
EXS_ARATH8.879e-1235.59Leucine-rich repeat receptor protein kinase EXS OS... [more]
BRL3_ARATH8.879e-1235.25Receptor-like protein kinase BRI1-like 3 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC06052D11T7 RindPdigS Citrus sinensis cDNA clone C06052D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921795 ID=FC921795; Name=FC921795; organism=Citrus sinensis; type=EST; length=388bp
CGCGGGCAGATCGATGCATTTCAGAAGGTCTATCCTCTGTAATGTATAGG
GCTTCGTTTGGAGATGATGCTTCAACTTCAAAAAAGTTTGAAGCCACTGT
TACTCGCCTTAATCCATCCAGCCAGGGTGTGAAGGAATTTATAAATGATG
TAAACACCCTTGCATCATTGCAACATCCAAATCTCTGTAAATTGCTTGGT
TTTCATGCACGTGATGGATCGGACCAGAGAATGTTGATCTATGAGAGACT
TTTTCATGGAAGCTTGGACCGTCTTATTTATGGGAGATCAGATGGGCCTC
CAATTGATTGGAACACCAGGGTAAAAATTGCATTATGTGCTGCACAAGGT
CTTACCTTCTTGCATGAAGAAGGGCCTTTTCAGGCAAA
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